PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_212030_ikjr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 488aa    MW: 55333.7 Da    PI: 6.6971
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_212030_ikjr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.42.3e-113804882374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaal........ 81 
                         ++lL++cAe +s ++++ a++lL+ +s   as++gd+++Rl+ yf +AL++rl+r+ s++   +  p+ + ++++ +++   +        
  Bv9_212030_ikjr.t1  80 RQLLVTCAELISRSEFSSANRLLSLVSSElASQSGDSTERLVYYFCRALNERLNRHLSSITTCVisPSMSIPPQSLAQH---Ypiipirpp 167
                         689*********************998666*************************766666554312222222333333...145588899 PP

                GRAS  82 .................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspe 151
                                            +++v+P+ +f+hltaNqaIleaveg + +Hi+D+di++G+QWp+L+qa+ +R+    ++ p++RiTg +   
  Bv9_212030_ikjr.t1 168 imramplesttsryssyLSLNQVTPFTRFTHLTANQAILEAVEGYSSIHILDMDIMHGVQWPPLMQAIMERSttlgRPCPTIRITGAAY-- 256
                         9999999888887765344*****************************************************99888899*********.. PP

                GRAS 152 sgskeeleetgerLakfAeelgvpfefnvl......vakrledl....eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklv 231
                           + + le+tg+rL++fAe+lg++f+f+ l      v+++ e++      ++Lr+++ +Eala+n+   lhrll+ + +++s  +++L++v
  Bv9_212030_ikjr.t1 257 --DPNLLEKTGDRLRRFAESLGLEFQFRDLllhdseVVDHSEAVihtlLDHRLRFNQvEEALAINCGDYLHRLLR-EYDTRS-LRRFLHQV 343
                         ..9*************************997777764444333311113445577779****************5.455555.699***** PP

                GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                         k+l+P+v+++ e+eadhn++ Fl+rf+eal++y a+fdslea+lp++s+er+ vE+ ++g+ei++vv  eg++r+erh+++e+W+  l+++
  Bv9_212030_ikjr.t1 344 KTLNPRVLTLGEREADHNHPIFLRRFVEALDHYGAIFDSLEATLPPQSRERVAVEEGWFGEEIKDVVGEEGERRKERHQRFESWEVVLRSS 434
                         ******************************************************************************************* PP

                GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                         GFk+++ls +  +qaklllr ++ s+gy+++  +s++l+lgWk+rpL+svS+W+
  Bv9_212030_ikjr.t1 435 GFKSLALSPFSLSQAKLLLRLHYpSEGYQLQvLNSNCLLLGWKNRPLYSVSSWQ 488
                         *******************************56799*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.23553466IPR005202Transcription factor GRAS
PfamPF035148.0E-11180488IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MLGSSSYSSE EDHQNQHERS SPLDLPQPTP SFLDYPRQLI TTTTATTTTT SVASSSVVLS  60
SSLPTSLLLL SSQSSVAQPR QLLVTCAELI SRSEFSSANR LLSLVSSELA SQSGDSTERL  120
VYYFCRALNE RLNRHLSSIT TCVISPSMSI PPQSLAQHYP IIPIRPPIMR AMPLESTTSR  180
YSSYLSLNQV TPFTRFTHLT ANQAILEAVE GYSSIHILDM DIMHGVQWPP LMQAIMERST  240
TLGRPCPTIR ITGAAYDPNL LEKTGDRLRR FAESLGLEFQ FRDLLLHDSE VVDHSEAVIH  300
TLLDHRLRFN QVEEALAINC GDYLHRLLRE YDTRSLRRFL HQVKTLNPRV LTLGEREADH  360
NHPIFLRRFV EALDHYGAIF DSLEATLPPQ SRERVAVEEG WFGEEIKDVV GEEGERRKER  420
HQRFESWEVV LRSSGFKSLA LSPFSLSQAK LLLRLHYPSE GYQLQVLNSN CLLLGWKNRP  480
LYSVSSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-57814886375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690197.10.0PREDICTED: scarecrow-like protein 18
TrEMBLA0A0K9S2J70.0A0A0K9S2J7_SPIOL; Uncharacterized protein
STRINGXP_010690197.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-105GRAS family protein