PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_209530_aktr.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 272aa MW: 30944.8 Da PI: 9.0856

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_209530_aktr.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111.1	1.2e-34	50	193	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 lp+G+rF+Ptd+el+ ++L+ kv+ ++ + + +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ Bv9_209530_aktr.t1 50 LPAGVRFDPTDQELI-QHLEGKVRPDDetsrglhplI---DefipTLEGEnGICYTHPEKLP-GVRKDGQVRHFFHRPSKAYTTGTRKRRK 135 799**********.99*99886666665432...133222444447******.666777888**************7 PP NAM 78 tk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ + +W++tgk+++vl+ +g++ g kk+Lv+y g+++k++kt+Wvmh+y+l Bv9_209530_aktr.t1 136 VHtdddgsETRWHKTGKTRPVLN-DGRVRGYKKILVLYtnYGKQKKPQKTNWVMHQYHL 193 44456555788********.999*******65589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-37	45	212	IPR003441	NAC domain
PROSITE profile	PS51005	32.956	50	212	IPR003441	NAC domain
Pfam	PF02365	2.3E-16	51	193	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MTWCNESNDI ETVDKNAATS RSDTRVKFCP SCGHQIKCQQ QGRINDLPGL PAGVRFDPTD 60 QELIQHLEGK VRPDDETSRG LHPLIDEFIP TLEGENGICY THPEKLPGVR KDGQVRHFFH 120 RPSKAYTTGT RKRRKVHTDD DGSETRWHKT GKTRPVLNDG RVRGYKKILV LYTNYGKQKK 180 PQKTNWVMHQ YHLGVDEEEK DGEIVVSKVF YQTQPRQCGS ILKINGRVSN PSPRNELGEC 240 YSHSSIISFE QKSNSNTKGS ASTAMFPFCC PR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010689784.1	0.0	PREDICTED: NAC domain-containing protein 73
Swissprot	O49459	1e-119	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	T2CBH3	1e-133	T2CBH3_9CARY; Putative NAC domain class transcription factor
STRING	XP_010689784.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-121	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]