PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv9_209170_oise.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | TCP | ||||||||
Protein Properties | Length: 362aa MW: 38249.7 Da PI: 7.1985 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.3 | 3.2e-35 | 23 | 130 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i++l+++ Bv9_209170_oise.t1 23 ATGRKDRHSKVFTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDKLAELppwdptasasnavdvnagpttefgvg 113 589**************************************************************88886554444444444444444443 PP TCP 66 ....ssssaseceaesssssasnsssg..........k 89 s + + Bv9_209170_oise.t1 114 dhsgS---------------------SsfyvpqcvdsQ 130 33220.....................133333333220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-30 | 24 | 89 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.313 | 26 | 84 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MGLKSTAAGG EIVQVQGGHI IRATGRKDRH SKVFTAKGPR DRRVRLSAHT AIQFYDVQDR 60 LGYDRPSKAV DWLIKKAKAS IDKLAELPPW DPTASASNAV DVNAGPTTEF GVGDHSGSSS 120 FYVPQCVDSQ SLGDSMKSFF PTNNASEENS ISFQNYPHDL ISRGASQNQD LCLSLHTLQD 180 PGGSSSGHHH TTSSHHHSAL FQGSGSSLGF DGGTGGWTES QQPHDLGRFT RMLSWPSGGG 240 AGSGGSSGGS GTGEGRGGIL FNSSLFQPQG LLLGHQQGPI TTSTFSQRGP LQSNFSPLAR 300 VVEDHHHHHN HHQEISGIGH GSDGFMGFCI PSQIHGELHG GANSMSTNRA SSSSMSPDSS 360 QH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-22 | 31 | 84 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-22 | 31 | 84 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010689747.1 | 0.0 | PREDICTED: transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 4e-79 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A0K9QJY5 | 1e-143 | A0A0K9QJY5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010689747.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-64 | TCP family protein |