PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_208900_gijo.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 297aa    MW: 32202.6 Da    PI: 5.539
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_208900_gijo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-3078136259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY  eHnh+
  Bv9_208900_gijo.t1  78 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVITYACEHNHP 136
                         69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3170138IPR003657WRKY domain
SuperFamilySSF1182905.36E-2673138IPR003657WRKY domain
SMARTSM007744.0E-3677137IPR003657WRKY domain
PROSITE profilePS5081132.16878138IPR003657WRKY domain
PfamPF031061.7E-2579136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVMENKHRTS SYFTNEQDDP QSSSENGPDS PLSGDDLRTT ATAPSPKKSR RSIQKRVVSI  60
PIGDVDGSRS KGEAYPPSDS WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVERSRV  120
DPTMLVITYA CEHNHPLPTT KHHHHHHQNN HQTIVTATTT APPPVASPST PSPATPPIST  180
APSDSAEDGG EETSPSSPLH INPFGDPPLL EFVGGDSLML GSLGVEFNWI SDLSFDTPAL  240
VGPTFDDAEV ATFPMKEEDE SLFGDLDELP ECSLVFRRGQ GSIERCTTTA TPICGST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-2255139680Disease resistance protein RRS1
5w3x_D3e-2255139680Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840332e-47GU984033.1 Cucumis sativus WRKY protein (WRKY47) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689722.10.0PREDICTED: probable WRKY transcription factor 69 isoform X1
TrEMBLA0A0J8BLH30.0A0A0J8BLH3_BETVU; Uncharacterized protein
STRINGXP_010689722.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.19e-64WRKY DNA-binding protein 69