PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_205240_sder.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 403aa    MW: 44884.7 Da    PI: 7.0752
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_205240_sder.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.8e-10139160526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C+ ++r+G C++Gd C FaHg
  Bv9_205240_sder.t1 139 VCPEYRRSGSCSRGDDCDFAHG 160
                         7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.55E-6133164IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056135162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-6138162IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-7139160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4167198IPR000571Zinc finger, CCCH-type
SMARTSM003561.6170193IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484170194IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGSVCAEHHH HHYHHQTHKF HPLISPKKAL QDLNIPPRKL LSRRSDAAEY YSPSSEAAAS  60
LMHKFLPCNG DSSPTGGGSD DAFDPDDDPY SSDEFRMYEF KVRKCTRSRS HDWTDCPFSH  120
PGEKARRRDP RRFHYSGTVC PEYRRSGSCS RGDDCDFAHG VFECWLHPAR YRTEACKDGK  180
NCKRKVCFFA HSPRELRVLP AEEDGEEREN CSQRGHNGKH QHQQHCCRYC CALSPTSTLL  240
GLSNFSPPMS PSLSPPMSPM KAVSARGLSG FSRYSDRVVA CGSKGMSYED MVIADLLGSL  300
EGMSLSEAMS PANKAGHSRG LWVDVGGYDN GVGEDYQQQL PHQQMQFSLS PSTPINNQSA  360
FTSSRNYFSA ANADSSVSGV VNNNNNNSFD ESPDLGWVND LLM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689060.10.0PREDICTED: zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA12e-86C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0K9QWU31e-177A0A0K9QWU3_SPIOL; Uncharacterized protein
STRINGXP_010689060.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-73C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]