PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_202700_huxy.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

TCP

Protein Properties

Length: 314aa MW: 33020.4 Da PI: 10.2525

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_202700_huxy.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.4	7.2e-40	56	184	2	125
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgka 90 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s ss+++++ ++ Bv9_202700_huxy.t1 56 TVKKAPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPHSLSSTSHHH---QQ 143 689*************************************************************9999988864444444444432...23 PP TCP 91 aksaakskksqksaasalnlakesr......akarararer 125 +++ + +s+++++++l++ + ++ r +a+e+ Bv9_202700_huxy.t1 144 LRTSVLTTSSSDNNNNNLKPTTTTTtpfllgKRLRTTAEEN 184 33333333333333323333333333455444444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-32	62	162	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	62	116	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MSATDGATNG GGGGGGGGVI IDHTHSLSQQ RQAATSTTTT QTTTTTVAAP TSTTLTVKKA 60 PAKDRHSKVD GRGRRIRMPI ICAARVFQLT RELGHKSDGQ TIEWLLRQAE PSIIAATGTG 120 TTPASFSTSS PHSLSSTSHH HQQLRTSVLT TSSSDNNNNN LKPTTTTTTP FLLGKRLRTT 180 AEENEAQNGV VDKEDVTTAS IGVGPATGYW AIPTRPDFWS FAAGPEMVVG PALTQQAAAM 240 AGRFLSHHQH QQQQQHHQHQ QHQVVSLGEP SRVGNYMPIG QGHHLNLLAS LSGAPASATG 300 ASSAAGGRRD DDPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010688658.1	0.0	PREDICTED: transcription factor TCP21
Swissprot	Q9FMX2	5e-67	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0K9R6R1	1e-113	A0A0K9R6R1_SPIOL; Uncharacterized protein
STRING	XP_010688658.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-40	TCP family protein