PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_200770_tois.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 448aa    MW: 48337.9 Da    PI: 6.4035
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_200770_tois.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY764.4e-24245299259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr    C+s+ gC+++k+vers++dp++++itY++eHnh+
  Bv8_200770_tois.t2 245 SDLWAWRKYGQKPIKGSPYPR----CSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 299
                         699***************996....99888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-24237301IPR003657WRKY domain
PROSITE profilePS5081126.911239301IPR003657WRKY domain
SuperFamilySSF1182901.96E-20242301IPR003657WRKY domain
SMARTSM007745.9E-31244300IPR003657WRKY domain
PfamPF031066.9E-19246299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEDYQGDLAD IVRASGGTIG SRSGTSATTA ATTTTTTNGQ ISKWRFGSSN QDYHQSNVIY  60
PFPADNTLLH DMDAISTSTS FIDMGVDDIV KRGGGGGGGG GVMGPVSSGP SNNSLCSIFS  120
SNMVQISPSV NNNNITSSSN DNSSNNSRVR LPGLQAVAAS SPKVRKERSY EFMSNQMISI  180
SNNASCSSPK DGGFIDANCG GSRGVQISSP RNQGIKRRKI QAKKVVCIPA PAVANSRQTG  240
EVVPSDLWAW RKYGQKPIKG SPYPRCSSSK GCSARKQVER SRTDPNMLVI TYTSEHNHPW  300
PTQRNALAGS TRSSQPSKTS SKLSPPSHKH SNNNFQNVLV NDENNQRATT PTFSINEEED  360
NKDEDIINKS SIDNDNELFN NSYRPLIMAE PITNGGQQVD QDFFADLVEF EGDDTLGLDP  420
FTGLFDWATN NTNTTPITNV QDNDHTTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-19221302480Disease resistance protein RRS1
5w3x_D2e-19221302480Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665626.10.0PREDICTED: probable WRKY transcription factor 14
SwissprotO647472e-69WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A0J8B6S40.0A0A0J8B6S4_BETVU; Uncharacterized protein
STRINGXP_010665626.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-68WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]