PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv8_200770_tois.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | WRKY | ||||||||
Protein Properties | Length: 452aa MW: 48877.5 Da PI: 6.6267 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.3e-31 | 245 | 303 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Bv8_200770_tois.t1 245 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 303 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-31 | 237 | 305 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.925 | 239 | 305 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-26 | 242 | 305 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 244 | 304 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-26 | 246 | 303 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MEDYQGDLAD IVRASGGTIG SRSGTSATTA ATTTTTTNGQ ISKWRFGSSN QDYHQSNVIY 60 PFPADNTLLH DMDAISTSTS FIDMGVDDIV KRGGGGGGGG GVMGPVSSGP SNNSLCSIFS 120 SNMVQISPSV NNNNITSSSN DNSSNNSRVR LPGLQAVAAS SPKVRKERSY EFMSNQMISI 180 SNNASCSSPK DGGFIDANCG GSRGVQISSP RNQGIKRRKI QAKKVVCIPA PAVANSRQTG 240 EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC SSSKGCSARK QVERSRTDPN MLVITYTSEH 300 NHPWPTQRNA LAGSTRSSQP SKTSSKLSPP SHKHSNNNFQ NVLVNDENNQ RATTPTFSIN 360 EEEDNKDEDI INKSSIDNDN ELFNNSYRPL IMAEPITNGG QQVDQDFFAD LVEFEGDDTL 420 GLDPFTGLFD WATNNTNTTP ITNVQDNDHT TV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-25 | 221 | 306 | 4 | 80 | Disease resistance protein RRS1 |
5w3x_D | 5e-25 | 221 | 306 | 4 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010665626.1 | 0.0 | PREDICTED: probable WRKY transcription factor 14 | ||||
Swissprot | O64747 | 9e-76 | WRK35_ARATH; Probable WRKY transcription factor 35 | ||||
TrEMBL | A0A0J8E0Q5 | 0.0 | A0A0J8E0Q5_BETVU; Uncharacterized protein | ||||
STRING | XP_010665626.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 1e-74 | WRKY DNA-binding protein 35 |
Publications ? help Back to Top | |||
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