PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv8_200210_uzdz.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 733aa MW: 80271 Da PI: 5.8651 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.8e-19 | 61 | 116 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++l+L+ qVk+WFqN+R+++k Bv8_200210_uzdz.t1 61 KKRYHRHTQHQIQEMENFFKECPHPDDKQRKELSRRLSLEPLQVKFWFQNKRTQMK 116 688999***********************************************998 PP | |||||||
2 | START | 214.8 | 3.1e-67 | 253 | 473 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela +a++el+++a+a+ep+Wv s+ e++n++e+ ++ + + + ++ea+r+s vv+m++++lve+l+d++ qW+ + + Bv8_200210_uzdz.t1 253 ELAVAAMEELIRMAQAGEPLWVPSPdnmtEILNEEEYFRTSSHGIGpmplgLKSEASRDSCVVIMNHMNLVEILMDVN-QWSCVFSgivsR 342 57899************************************99988********************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 a+tl+v+s+g galq+m+ae+q++splvp R+ +fvRy++q+g+ +w++vdvS+d ++ p + R++++pSg+li++++ng+s Bv8_200210_uzdz.t1 343 AMTLDVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGDSTWAVVDVSLDGLRPSP----IPRCRRRPSGCLIQELPNGYS 429 ****************************************************************99....6******************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kv wvehv++++r +h+++r lv+sgla+gak+wv+tl+rqce+ Bv8_200210_uzdz.t1 430 KVMWVEHVEVDDRAVHNIYRALVNSGLAFGAKRWVSTLDRQCER 473 ******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.27E-19 | 48 | 118 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 49 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.601 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.0E-18 | 59 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.48E-18 | 61 | 119 | No hit | No description |
Pfam | PF00046 | 5.0E-17 | 61 | 116 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 8.93E-36 | 244 | 475 | No hit | No description |
PROSITE profile | PS50848 | 43.642 | 244 | 476 | IPR002913 | START domain |
CDD | cd08875 | 4.58E-126 | 248 | 472 | No hit | No description |
SMART | SM00234 | 1.4E-68 | 253 | 473 | IPR002913 | START domain |
Pfam | PF01852 | 1.9E-55 | 254 | 473 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.4E-5 | 349 | 473 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.08E-26 | 493 | 725 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MFQPNMFETH HQLLDMAAGH KTPDSELGKM RDDEFESSRS ATENLEGLSG DDQDPNQRPK 60 KKRYHRHTQH QIQEMENFFK ECPHPDDKQR KELSRRLSLE PLQVKFWFQN KRTQMKAQHE 120 RSENQQLRSE NDKLRADNIR FKEALSNATC PNCGGPAAIG EMSFDEQQLR IENARLREEI 180 DRISGIAAKY VGKPLVTYPH LQNQGLQSRS SLDLGVGSFG PQSGMVGDIY GSAGDLLRSV 240 APPTDADKPM IIELAVAAME ELIRMAQAGE PLWVPSPDNM TEILNEEEYF RTSSHGIGPM 300 PLGLKSEASR DSCVVIMNHM NLVEILMDVN QWSCVFSGIV SRAMTLDVLS TGVAGNYNGA 360 LQVMTAEFQV PSPLVPTREN YFVRYCKQHG DSTWAVVDVS LDGLRPSPIP RCRRRPSGCL 420 IQELPNGYSK VMWVEHVEVD DRAVHNIYRA LVNSGLAFGA KRWVSTLDRQ CERLASVMAS 480 NMPAGEGGVI TSPEGRKSML KLAERMVMSF CAGVGASTAH TWTTLSGSGA DDVRVMTRKS 540 MDDPGRPPGI VLSAATSFWM PVSPKRVFDF LRDENSRSEW DILSNGGLVQ EMAHIANGRD 600 PGNCVSLLRV NSANSSQSNM LILQESSTDS TGSYVIYAPV DIVAMNVVLN GGDPDYVALL 660 PSGFAILPDG PVAGHGGGGM EVGSGGSLLT VAFQILVDSV PTAKLSLGSV ATVNSLIKCT 720 VERIKAAVAC ESA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM483951 | 2e-34 | AM483951.2 Vitis vinifera contig VV78X162089.20, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010665524.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_010665525.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A0K9R0U5 | 0.0 | A0A0K9R0U5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010665524.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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