PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_199800_dheu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 791aa    MW: 87828.4 Da    PI: 8.0889
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_199800_dheu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.4e-18309409199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+l+ sd+++ grlvlpkk+ae++       ++e+  l+++d +g++W++++++  +++s++yvl+ G  +  ++ +L++gD+v F ++
  Bv8_199800_dheu.t1 309 FEKILSASDAGRIGRLVLPKKCAEAYfppiC--QPEGLPLKVQDINGKEWTFQFRFwpNNNSRMYVLE-GITNCLQSLQLRAGDTVSFGRT 396
                         99**************************652..445667***************9989999999***9.********************65 PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         +  e++l ++++++
  Bv8_199800_dheu.t1 397 E-PEGKLILGFRKA 409
                         4.888888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0135903491IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.104.8E-30305417IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-20306413IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-22307408No hitNo description
SMARTSM010192.1E-20309410IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912309410IPR003340B3 DNA binding domain
PfamPF023623.5E-14309409IPR003340B3 DNA binding domain
PROSITE profilePS5105013.224537587IPR011124Zinc finger, CW-type
PfamPF074962.7E-10542584IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MSSKLCFNSE CKVSNSETWK KGWRLQNHNF ANLCHRCGSI YEEGRFCETF HKYASGWRCC  60
ETCEKRVHCG CIVSLHAFVV LDAGGIECML CANKYVTLTP NQMGTPPPLP DWLAQSPVMN  120
GNQNPGLASN GLWHQGKNLF NITTNDLNSG SRMSFEVGMS TGLERLESNK PRNLSFSNGS  180
LKHNGSEKPG CNSAVVNCKE EPSHMHQSTL KDGQCALLSG KGSSSLREDN DAKDHSVLSQ  240
QLYPQDIARR QLSADDNNAD SSCQSLICNF KPVEVGVRKD LNARYRPKIS GEESKLISGS  300
THSAITPLFE KILSASDAGR IGRLVLPKKC AEAYFPPICQ PEGLPLKVQD INGKEWTFQF  360
RFWPNNNSRM YVLEGITNCL QSLQLRAGDT VSFGRTEPEG KLILGFRKAS CGPQSDQGVQ  420
AVKSGNEMHA GQHAGYQKPK HKEDLTQSHS KVNKAPGASS FIPIKRKNSM LSSKRKRERA  480
DNVDLLGLKV TLEEAQGLFR SPPRHSPCVV IIEDFKFEEY EDAPVIGRPT ITIRDYLGED  540
IQWTQCDNCL KWRKLPYDSL LPANWTCVEN AWDFERSSCE AAQELTVKQL QDLLSINNSE  600
SIGAAAFKKL QDAELDAHGP EDLEALDRFA IEGYCEVSPA STPPTSKHPR HRLGCSCIVC  660
NQPPSGGPKH PQNCGCKVCM TVRRRFQTMM IRRGRNHTER ENVIQEFKSQ GNTRSSVKSD  720
PAIEVLKSSS KVYVNGDRKV ISTSVEGQID LNTQPQREEV STCCNSMALK KQDTPDRGVC  780
KLGDMDPKIS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-572874102125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696615.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X1
TrEMBLA0A0J8BA700.0A0A0J8BA70_BETVU; Uncharacterized protein
STRINGXP_010696615.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-156HSI2-like 1