PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_199270_qpxd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 273aa    MW: 30436.3 Da    PI: 8.9752
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_199270_qpxd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-12555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        +++WT++E+e l  +v+++G+g Wk+I +          R+  ++k++w++
  Bv8_199270_qpxd.t1  5 KQKWTADEEEALRAGVAKHGPGKWKLIQKDPDfnrylHSRSNIDLKDKWRN 55
                        79***********************************9***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.895161IPR017930Myb domain
SuperFamilySSF466896.43E-16258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-14456IPR009057Homeodomain-like
SMARTSM007171.6E-8459IPR001005SANT/Myb domain
PfamPF002496.0E-9555IPR001005SANT/Myb domain
CDDcd116603.27E-20656No hitNo description
SMARTSM005264.1E-9112177IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.31E-11112185IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.0E-10114176IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150417.674114181IPR005818Linker histone H1/H5, domain H15
PfamPF005383.3E-8117174IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGNPKQKWTA DEEEALRAGV AKHGPGKWKL IQKDPDFNRY LHSRSNIDLK DKWRNMSAAV  60
QGSRDKLRTP KPKPTQDGPA TPSVATQNPT AAPVPVVHES PADHVKDDSA KDTNGSRYNE  120
LIFEALSAVK EQNGLDIGSI LSYIEQKIEV PQNFRKQLGA RLRRLVHQEK LEKVDSYYRP  180
KNNSMELNAS NRKDGWPRQH LATACSRVGE SLEEAAKTAA YKVAEAENKA FTAAEAVKDA  240
EKLAKMVEET DSILQLAKEI FDRCTHGELV LVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696540.10.0PREDICTED: telomere repeat-binding factor 4
TrEMBLA0A2I4GQM64e-96A0A2I4GQM6_JUGRE; telomere repeat-binding factor 4-like
STRINGXP_010696540.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.24e-54MYB_related family protein