PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_198730_khqq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 368aa    MW: 41580.1 Da    PI: 7.2643
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_198730_khqq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd  l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  Bv8_198730_khqq.t1 14 KGPWSPEEDATLKAYIEKYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding40.27.9e-1369111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T+eEd +++ +    G++ W+ Ia+ ++ gRt++++k++w++
  Bv8_198730_khqq.t1  69 GGFTEEEDNIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.477962IPR017930Myb domain
SuperFamilySSF466891.12E-2711109IPR009057Homeodomain-like
SMARTSM007178.2E-131364IPR001005SANT/Myb domain
PfamPF002494.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-251569IPR009057Homeodomain-like
CDDcd001676.19E-91662No hitNo description
PROSITE profilePS5129422.6863117IPR017930Myb domain
SMARTSM007173.7E-1267115IPR001005SANT/Myb domain
PfamPF002491.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2470117IPR009057Homeodomain-like
CDDcd001671.44E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDATLKAYIE KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDNIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
KRQQQQQNGC KDELSSSALE RLQLHMQLQS QQGLQNSLSL FNNHHTILPK LHPLIQDKLI  180
QNNLHSLNSQ MIQYPNYNGL DFLDHTSSNL VHLQEDHTKN NNDNNNNNNN SNKGIIIVNK  240
EQVIEELESS SLNGSASSGS SNLVNNNNSN DNNNNNNNNN NNEVMKNSNI GKYVDLKPDV  300
YTTGMQRVLS FQAELNELLA SDKVGNIEFE GINSWWSNDS SSTISWDASN VVLQSDNTST  360
MLYNQDYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-241411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688500.10.0PREDICTED: transcription factor MYB36
TrEMBLA0A0K9QMI21e-159A0A0K9QMI2_SPIOL; Uncharacterized protein
STRINGXP_010688500.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-78myb domain protein 36