PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_196260_ukur.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 313aa    MW: 35955.4 Da    PI: 6.4367
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_196260_ukur.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-355972103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F++k+y++++d++++ lisw + +nsfvv+++ +f++++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+
  Bv8_196260_ukur.t1   5 FVMKTYQMVSDPSTDYLISWGRANNSFVVVEPLDFSQRILPSYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKQ 86 
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i rkk++
  Bv8_196260_ukur.t1  87 LLSNIARKKHT 97 
                         ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-51194IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.0E-37294IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.01E-32394IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.0E-30594IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-18528IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-184355IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404468IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVAPFVMKTY QMVSDPSTDY LISWGRANNS FVVVEPLDFS QRILPSYFKH NNFSSFVRQL  60
NTYGFRKVDP DRWEFANEWF LRGQKQLLSN IARKKHTTRS YPHLQDADNH ELLVEIERLR  120
EEQKMLDDEL QGMNQRLKAT ERRPQQMMAF LCKFVEDPDI LPRVVMERDR AKHVCGVGGE  180
GGVASPEKRR RLLTMSSSTS TSGHAQSNSE EEESTTLGPN SSPHLNSNVD TFPHSPLSPN  240
TCNSPMLLDI FHSNHQQYNY NCISVTSPWE LVPNVDSLHM GMNNSMYIGN NPNYMPMKEE  300
NPPYPFSLLD GGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2529426129Heat shock factor protein 1
5d5v_B1e-2529426129Heat shock factor protein 1
5d5v_D1e-2529426129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187191KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688193.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV527e-87HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLB9ILM21e-101B9ILM2_POPTR; Uncharacterized protein
STRINGXP_010688193.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-79heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]