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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Bv8_196060_hado.t1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 286aa MW: 33312.7 Da PI: 4.3987 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 46.3 | 1.1e-14 | 48 | 132 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W++q + aL+e+ e+ +l+r++l+ +W++v++++ +++ ++rs C+++++ l+++yk++k+ ++ + s+++yf++++
Bv8_196060_hado.t1 48 WSEQGTFALLEIWGERFLQLGRSSLRSEDWSDVAERVsEATRMKRSVSDCRNRLNALKMKYKREKTKVIGL-GGGISKWVYFKKMD 132
*************************************666788*************************986.78888********7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 9.7E-19 | 47 | 133 | No hit | No description |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 286 aa Download sequence Send to blast |
MDRRSNFPYS RRPKPPKSYA EEDDDDENDA LSTWNYQLSP NSSNASDWSE QGTFALLEIW 60 GERFLQLGRS SLRSEDWSDV AERVSEATRM KRSVSDCRNR LNALKMKYKR EKTKVIGLGG 120 GISKWVYFKK MDVLMTMSPR QLQQQEQCGL ACGVDSGEFV FMNPRVYLDH SNASDEMRDS 180 PGNSESEGEE DDEEDEEEDE EEAEQSYRML SDSIKRVGEI YEKIEDSKKQ HMMELEKMRV 240 EYQRELELQK KDMMDRTKAE IAKLGVKDDQ DSDCSVENWM TSEGRN |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010688178.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
| TrEMBL | A0A0K9RIX0 | 1e-147 | A0A0K9RIX0_SPIOL; Uncharacterized protein | ||||
| STRING | XP_010688178.1 | 1e-180 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G24490.1 | 2e-79 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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