PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_193660_jkcu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TALE
Protein Properties Length: 440aa    MW: 49800.8 Da    PI: 8.885
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_193660_jkcu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.63.2e-112592971854
                         HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         lFe   ++yps ++++ LA+k+gL+ +qV++WF N R +
  Bv8_193660_jkcu.t1 259 LFEHflHPYPSDTDKQMLAQKTGLSRSQVSNWFTNARVR 297
                         5665569******************************98 PP
2BELL82.45.7e-27139204772
                BELL   7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +    L+s+l+eV+krYk y++q+q  +ssFe vaglg+a+p+  +A ka+ +hF+cLk+ai ++i
  Bv8_193660_jkcu.t1 139 STHPNLVSMLHEVYKRYKLYCQQMQSAVSSFESVAGLGNAAPFLCFAVKAMFKHFQCLKNAILDHI 204
                         55567*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.6E-2582202IPR006563POX domain
PfamPF075263.1E-2687200IPR006563POX domain
PROSITE profilePS5007112.681238301IPR001356Homeobox domain
SMARTSM003894.4E-12241305IPR001356Homeobox domain
CDDcd000861.58E-13241302No hitNo description
SuperFamilySSF466897.27E-18243308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-28244306IPR009057Homeodomain-like
PfamPF059203.3E-18258297IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDEIFGPFHI PQQSRRHKLR YHHQNDDVII PNHNFLSPLQ LQQATSSSSS PLVDPLMAST  60
NLSLSSSTHA RAYHPSPVGP FTGYASILAR SRFLRPAQDL LDEFSATNGV SFQKHSLKIL  120
EDSGTLFCDD DHNHASLRST HPNLVSMLHE VYKRYKLYCQ QMQSAVSSFE SVAGLGNAAP  180
FLCFAVKAMF KHFQCLKNAI LDHIRVTSKA FSNVDTRRDP TSGSCSEDKA PASNFCQHPV  240
WRSQRGFPDK AVAVLRNWLF EHFLHPYPSD TDKQMLAQKT GLSRSQVSNW FTNARVRLWK  300
PMVEEMHALE RKSQCSKAAD TRKFITLSTD HNHQTSLHPL LSEKDFQISY SQHKDQDNNN  360
NSQYKRSRIE AFPVAEQGKE EQHFGMLCNR LPSNQVLGVG GSQTGAHLNH SSRLSNDHEN  420
TNGLSWANHG QIVPFWLAKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16247305563Homeobox protein Meis2
3k2a_B3e-16247305563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687910.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM84e-68BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A0K9RBJ40.0A0A0K9RBJ4_SPIOL; Uncharacterized protein
STRINGXP_010687910.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.13e-70TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]