PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bv8_188640_ngte.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 447aa MW: 49682.2 Da PI: 8.4625 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5.2e-06 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Bv8_188640_ngte.t1 59 YVCEICNQGFQRDQNLQMHRRRH 81 9*********************9 PP | |||||||
2 | zf-C2H2 | 16.6 | 2.1e-05 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Bv8_188640_ngte.t1 136 WVCDKCSKAYAVQSDYKAHLKTC 158 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.15E-5 | 58 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 58 | 81 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 59 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS01359 | 0 | 61 | 141 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 100 | 130 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 127 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.15E-5 | 131 | 156 | No hit | No description |
SMART | SM00355 | 84 | 136 | 156 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 48 | 163 | 185 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009590 | Biological Process | detection of gravity | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010031 | Biological Process | circumnutation | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 447 aa Download sequence Send to blast |
MLGGSSSSSA PSSEHVNVSS SPTDNGNSSK RKRRPAGTPD PDAEVVSLSP KTLLESDRYV 60 CEICNQGFQR DQNLQMHRRR HKVPWKLLKR ENPVVRKRVF VCPEPTCLHH DPCHALGDLV 120 GIKKHFRRKH SNHKQWVCDK CSKAYAVQSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH 180 QDACHMGRLR CSDHHHHHPS NPNQPSHQQQ QQQQQQQQPT VCLSRAASSS SPSNDTTNNI 240 TVAGPWTTNG ITMAKPSVAE NNLHNLELQL SVSPKAADHE NHSTQLQLSI GSTSDVGEKN 300 TTETNSNNKA STSSPASNNN NTATLKEQAS EQLRLAMAEK AYAEDARREA KRHVELAERE 360 FANAKRIRQQ AQAELDKAQA LKEHAMKQIS STLMQITCHA CKQQFHASMM MTTTTMTTAT 420 TMSCAPQIDD QNSSLAESQV VDDNNLH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-18 | 132 | 184 | 3 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 8e-18 | 132 | 184 | 3 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00254 | DAP | Transfer from AT2G01940 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010687241.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5 | ||||
Swissprot | F4IPE3 | 1e-151 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A0K9S033 | 0.0 | A0A0K9S033_SPIOL; Uncharacterized protein | ||||
STRING | XP_010687241.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68130.1 | 1e-131 | indeterminate(ID)-domain 14 |
Publications ? help Back to Top | |||
---|---|---|---|
|