PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_188430_iqnu.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 370aa    MW: 41178.6 Da    PI: 8.4667
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_188430_iqnu.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.41.2e-1511111286
            trihelix   2 WtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt..sess 76 
                         Wt +e++ Liea+++++er + ++                + +W++v ++++ +g+ rs++qC++kw+nl ++ykk++e  k+ +   e++
  Bv8_188430_iqnu.t2  11 WTVEETMILIEAKKKDDERRKFNRskqtqtlttstskpITELRWKWVEEYCWGKGCFRSQNQCNDKWDNLMRDYKKVREYLKNLSdhLEET 101
                         **************9999887654447778888888778899*************************************999875223455 PP

            trihelix  77 stcpyfdqle 86 
                         ++++ + +++
  Bv8_188430_iqnu.t2 102 ENIKSYWNMD 111
                         5666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.445381IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.2E-5683IPR009057Homeodomain-like
PfamPF138374.6E-1110112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAMRDYRKGN WTVEETMILI EAKKKDDERR KFNRSKQTQT LTTSTSKPIT ELRWKWVEEY  60
CWGKGCFRSQ NQCNDKWDNL MRDYKKVREY LKNLSDHLEE TENIKSYWNM DKVERKDKGL  120
PTNMLPQIYQ ALFDVVERSS ISSSTTTATP STSTTVAATS MALASVSAPF LLPIPMLEMQ  180
QSPPSAVPAL QLSPPLLLPS PLLPPPSQPP PPPPPLLPHS TFISSQALPP HPSPTLESET  240
SEHSHPELSP AKRRRKEEGG GRGRGGGGVG EGASGIATHT EAAAATSLED VSSAISRSAA  300
IISEAIQASE EREERRHREM MNLHQSRLRI VESMMEINRQ GLNGLADAIN RLATSIFTWA  360
NSHKTQQGPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259267GGRGRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687202.10.0PREDICTED: ENHANCER OF AG-4 protein 2 isoform X1
TrEMBLA0A0J8BV190.0A0A0J8BV19_BETVU; Uncharacterized protein
STRINGXP_010687202.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.14e-50Trihelix family protein