PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv8_188310_mhzu.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27455.1 Da PI: 10.0865 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.3 | 1.5e-31 | 19 | 68 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Bv8_188310_mhzu.t1 19 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 68 79***********************************************8 PP | |||||||
2 | K-box | 103.7 | 2.3e-34 | 87 | 187 | 5 | 100 |
K-box 5 sgks.leeakaeslqqelakLkkeienLqreq....RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 sg ++ea+a+++qqe+akL+++i++ +++ Rh++Ge+L+sLs+keL++Le++Le+++++iRskKnell+++ie +qk+e el+++ Bv8_188310_mhzu.t1 87 SGAGsVAEANAQYYQQEAAKLRNQIRTATENNrllsRHMMGEGLSSLSMKELKNLETKLERGISRIRSKKNELLFAEIEFMQKREIELHNN 177 3444499********************9966423338****************************************************** PP K-box 91 nkaLrkklee 100 n+ Lr+++ e Bv8_188310_mhzu.t1 178 NQFLRARISE 187 *****99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-42 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 34.034 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-33 | 12 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.06E-44 | 12 | 86 | No hit | No description |
PRINTS | PR00404 | 4.2E-33 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 13 | 67 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-27 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-33 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-33 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.1E-23 | 95 | 185 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.959 | 97 | 191 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEGSPSSQRK MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS 60 RGRLYEYANH SVKGTIDRYK KACSDQSGAG SVAEANAQYY QQEAAKLRNQ IRTATENNRL 120 LSRHMMGEGL SSLSMKELKN LETKLERGIS RIRSKKNELL FAEIEFMQKR EIELHNNNQF 180 LRARISENER AQQSMSLMPG GSDYDLVPSQ SFDSRNYFQV NALQPSSQYA RQDQTPLQLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 8e-21 | 11 | 79 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 8e-21 | 11 | 79 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 8e-21 | 11 | 79 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 8e-21 | 11 | 79 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 8e-21 | 11 | 79 | 1 | 69 | MEF2C |
5f28_B | 8e-21 | 11 | 79 | 1 | 69 | MEF2C |
5f28_C | 8e-21 | 11 | 79 | 1 | 69 | MEF2C |
5f28_D | 8e-21 | 11 | 79 | 1 | 69 | MEF2C |
6c9l_A | 8e-21 | 11 | 79 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 8e-21 | 11 | 79 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 8e-21 | 11 | 79 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 8e-21 | 11 | 79 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 8e-21 | 11 | 79 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 8e-21 | 11 | 79 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ083099 | 0.0 | DQ083099.1 Beta vulgaris Me341 (Me341) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010687170.1 | 1e-178 | PREDICTED: floral homeotic protein AGAMOUS isoform X2 | ||||
Swissprot | Q40872 | 1e-133 | AG_PANGI; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A1EAG0 | 1e-174 | A1EAG0_BETVU; MADS-BOX protein | ||||
STRING | XP_010687169.1 | 1e-175 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-111 | MIKC_MADS family protein |