PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_188010_ypde.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TCP
Protein Properties Length: 574aa    MW: 61891.9 Da    PI: 7.3118
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_188010_ypde.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.72.1e-381062632130
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 
                          g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a++ai el+ +                           
  Bv8_188010_ypde.t1 106 SGGKDRHSKVWTAKGPRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAQEAINELPALntasfppetprqlsderrgggngvdsa 196
                         689*************************************************************999999999888888888888866655 PP

                 TCP  66 ....ssssaseceaesssssasnsssgkaaksaa.kskksqksaasalnlak.esrakarararertrekm 130
                             +++++  +  ++++++++n++++  ak    +s++s++s+ s l+l++ e r kar+rarer ++++
  Bv8_188010_ypde.t1 197 dlelDADPN--F--GQNQNQNQNQQQQMVAKLGCsTSNNSETSKGSGLSLSRsEIRVKARERARERMAKEK 263
                         554433333..2..222222222222222222222445556666667888888999999999999766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-42107263IPR005333Transcription factor, TCP
PROSITE profilePS5136932.414108166IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.138245263IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MEVDEIESPE SSCKYSRVNS ANGRIDCSKI GAGGGGSGGG GHDNGEENEL DEINQRRGVV  60
STIEAAAAAG NGNSGGIGGD MIVGGSNRFG RQWQHSSRII RVSRASGGKD RHSKVWTAKG  120
PRDRRVRLSV TTAIQFYDLQ DRLGYDQPSK AVEWLIKAAQ EAINELPALN TASFPPETPR  180
QLSDERRGGG NGVDSADLEL DADPNFGQNQ NQNQNQQQQM VAKLGCSTSN NSETSKGSGL  240
SLSRSEIRVK ARERARERMA KEKDRDGEPS RVNVGSHQHH NNHHDEQQHH QHQHQHQHQH  300
QHHQQHVSSM PQTTSFTQLL TAGMNNLNES NNAAAASSTP SPHHHGSSEV SLFHKHSRGG  360
ESNNNNNNNN NQWLSTGSST SPMADYFGTG LMGLSSSRAG QIQLGHNTSS LPPVMTITSF  420
GGSENHHQSH DQLHHHHQHF PFLPDQHLIQ VANTASRASG CGGAGAGSTS DYNLNFTVSS  480
SPTSTTSGLA AGFYNRGTLQ SNSPSLLPYL QRFSATDGSS LPFFLGSAAV PSASPAVENH  540
HNHHHHHQQF QPPGLQLCYG DGGWPSDQKG KGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-24113167155Putative transcription factor PCF6
5zkt_B4e-24113167155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687111.10.0PREDICTED: transcription factor TCP2
RefseqXP_010687112.10.0PREDICTED: transcription factor TCP2
TrEMBLA0A0K9RLZ60.0A0A0K9RLZ6_SPIOL; Uncharacterized protein
STRINGXP_010687111.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-44TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2