PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv8_185810_kdqu.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

WRKY

Protein Properties

Length: 654aa MW: 70920 Da PI: 6.7981

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv8_185810_kdqu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.4	9.7e-31	378	436	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Bv8_185810_kdqu.t1 378 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 436 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-33	362	438	IPR003657	WRKY domain
SuperFamily	SSF118290	7.72E-28	370	438	IPR003657	WRKY domain
PROSITE profile	PS50811	29.677	372	438	IPR003657	WRKY domain
SMART	SM00774	3.7E-37	377	437	IPR003657	WRKY domain
Pfam	PF03106	1.1E-26	379	436	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence Send to blast
MDGGGWGLAL ESSSSDHRLI TSNNFFANSS SSSILNNKKH TNNSIMSKNN NNTQLFQGLD 60 FPVNLHRRGS NDHDHDHQLE DHDHDHDNKV VVGEVDFFSD HKNNNISVNR SSSSSASHHQ 120 QQQQQQHRVK EETSSRDHHH AAAVPVPDPN LDVNTGLHLL TTNTGSDQST VDDGASSDAE 180 DKRNKNELIV LQAELQRMNT ENQKLKSMLS QVSNNYNALQ MHLVTLMQQQ QNHRKGESNT 240 QLHEETMQGK VEEKEIVPRQ FLDLVPGANT EGDELTSQTL SDDERTVDRS SSPRNAMEVA 300 SRNNNKELML ANYDNGKRIR DESPEDSATQ GWVHNKVPKL MNNIPKATSP PVDHAAAEAT 360 MRKARVSVRA RSEAPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE 420 DRSILITTYE GNHNHPLPPA AMAMASTTSA AASMLLSGSM PSGDGLMNPN FLARTILPCS 480 SSMATISASA PFPTVTLDLT HSPNPLQRPS GPQANTPFQV PFPPPTAQVG PNFLSSIPQI 540 FGQALLNNNN NNSNQSKFSG LQTSTPQGLN AAHLQLPNQN AAFSDTLSAA TAAIASDPNF 600 TAALAAAISS IIGGARPPND NNNNAPGSSP SGVTTSSGNH ANNNVTSSNS MQQQ

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence Send to blast

MDGGGWGLAL ESSSSDHRLI TSNNFFANSS SSSILNNKKH TNNSIMSKNN NNTQLFQGLD  60
FPVNLHRRGS NDHDHDHQLE DHDHDHDNKV VVGEVDFFSD HKNNNISVNR SSSSSASHHQ  120
QQQQQQHRVK EETSSRDHHH AAAVPVPDPN LDVNTGLHLL TTNTGSDQST VDDGASSDAE  180
DKRNKNELIV LQAELQRMNT ENQKLKSMLS QVSNNYNALQ MHLVTLMQQQ QNHRKGESNT  240
QLHEETMQGK VEEKEIVPRQ FLDLVPGANT EGDELTSQTL SDDERTVDRS SSPRNAMEVA  300
SRNNNKELML ANYDNGKRIR DESPEDSATQ GWVHNKVPKL MNNIPKATSP PVDHAAAEAT  360
MRKARVSVRA RSEAPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE  420
DRSILITTYE GNHNHPLPPA AMAMASTTSA AASMLLSGSM PSGDGLMNPN FLARTILPCS  480
SSMATISASA PFPTVTLDLT HSPNPLQRPS GPQANTPFQV PFPPPTAQVG PNFLSSIPQI  540
FGQALLNNNN NNSNQSKFSG LQTSTPQGLN AAHLQLPNQN AAFSDTLSAA TAAIASDPNF  600
TAALAAAISS IIGGARPPND NNNNAPGSSP SGVTTSSGNH ANNNVTSSNS MQQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-22	364	440	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00428	DAP	Transfer from AT4G04450	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010686806.1	0.0	PREDICTED: probable WRKY transcription factor 31 isoform X1
Swissprot	Q9XEC3	1e-153	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	A0A0K9S1P8	0.0	A0A0K9S1P8_SPIOL; Uncharacterized protein
STRING	XP_010686806.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	1e-121	WRKY family protein