PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_185490_otdo.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TALE
Protein Properties Length: 389aa    MW: 43479.5 Da    PI: 7.2144
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_185490_otdo.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-093113452155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         k +yps++++  LA+++gL+++q+ +WF N+R ++
  Bv8_185490_otdo.t2 311 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 345
                         569*****************************885 PP
2ELK39.99e-14265286122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK qLlrKYsgyLgsL+qEF+
  Bv8_185490_otdo.t2 265 ELKGQLLRKYSGYLGSLRQEFL 286
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.6E-19120164IPR005540KNOX1
PfamPF037908.7E-23122158IPR005540KNOX1
SMARTSM012566.9E-27172223IPR005541KNOX2
PfamPF037913.4E-21176222IPR005541KNOX2
PROSITE profilePS5121311.366265285IPR005539ELK domain
SMARTSM011887.4E-8265286IPR005539ELK domain
PfamPF037891.1E-10265286IPR005539ELK domain
PROSITE profilePS5007112.827285348IPR001356Homeobox domain
SMARTSM003897.4E-13287352IPR001356Homeobox domain
SuperFamilySSF466891.92E-19287360IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-28290350IPR009057Homeodomain-like
CDDcd000868.50E-12297349No hitNo description
PfamPF059207.2E-17305344IPR008422Homeobox KN domain
PROSITE patternPS000270323346IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MESNGNGHGH GNNNTNASCM MMENGLYSMI MIPPLSHQHH QHQHHQHQHQ SHNSHHDNNS  60
HNNNNNKVCC CSSSACSSSV AAAAAAAAAS GCYDLHHHHH QLMGMENQTQ NVNNSSSSTG  120
NIKAKIMSHP HYPRLLSAYV SCQKVGAPPE VVARLEEAET MAMSHGGGGR SGGGYIGEDP  180
ALDQFMEAYC EMLTKYEQEL TKPFKEAMLF LSRIECQFKA LTLSSPSDNS LSSAACGKVP  240
DRNGSPEEDI DVNNNYIDPS AEDRELKGQL LRKYSGYLGS LRQEFLKKRK KGKLPKEARQ  300
QLLDWWSRHY KWPYPSESQK LALAESTGLD QKQINNWFIN QRKRHWKPSE DMQFVVMDAA  360
AHSHAHSHYG YMDNVLGNPF PMDVSPTLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173GGRSGGG
2280289LRQEFLKKRK
3286290KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686774.10.0PREDICTED: homeobox protein knotted-1-like LET6 isoform X1
SwissprotP466081e-133HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A0K9RBF51e-153A0A0K9RBF5_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010686774.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-119KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]