PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_185490_otdo.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TALE
Protein Properties Length: 388aa    MW: 43408.4 Da    PI: 7.2144
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_185490_otdo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-093103442155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         k +yps++++  LA+++gL+++q+ +WF N+R ++
  Bv8_185490_otdo.t1 310 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 344
                         569*****************************885 PP
2ELK39.99e-14264285122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK qLlrKYsgyLgsL+qEF+
  Bv8_185490_otdo.t1 264 ELKGQLLRKYSGYLGSLRQEFL 285
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.6E-19120164IPR005540KNOX1
PfamPF037908.7E-23122158IPR005540KNOX1
SMARTSM012566.9E-27172223IPR005541KNOX2
PfamPF037913.4E-21176222IPR005541KNOX2
PROSITE profilePS5121311.366264284IPR005539ELK domain
SMARTSM011887.4E-8264285IPR005539ELK domain
PfamPF037891.1E-10264285IPR005539ELK domain
PROSITE profilePS5007112.827284347IPR001356Homeobox domain
SMARTSM003897.4E-13286351IPR001356Homeobox domain
SuperFamilySSF466891.88E-19286359IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-28289349IPR009057Homeodomain-like
CDDcd000868.96E-12296348No hitNo description
PfamPF059207.2E-17304343IPR008422Homeobox KN domain
PROSITE patternPS000270322345IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MESNGNGHGH GNNNTNASCM MMENGLYSMI MIPPLSHQHH QHQHHQHQHQ SHNSHHDNNS  60
HNNNNNKVCC CSSSACSSSV AAAAAAAAAS GCYDLHHHHH QLMGMENQTQ NVNNSSSSTG  120
NIKAKIMSHP HYPRLLSAYV SCQKVGAPPE VVARLEEAET MAMSHGGGGR SGGGYIGEDP  180
ALDQFMEAYC EMLTKYEQEL TKPFKEAMLF LSRIECQFKA LTLSSPSDNS LSSACGKVPD  240
RNGSPEEDID VNNNYIDPSA EDRELKGQLL RKYSGYLGSL RQEFLKKRKK GKLPKEARQQ  300
LLDWWSRHYK WPYPSESQKL ALAESTGLDQ KQINNWFINQ RKRHWKPSED MQFVVMDAAA  360
HSHAHSHYGY MDNVLGNPFP MDVSPTLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173GGRSGGG
2279288LRQEFLKKRK
3285289KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686775.10.0PREDICTED: homeobox protein knotted-1-like LET6 isoform X2
SwissprotP466081e-132HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A0K9RBF51e-153A0A0K9RBF5_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010686774.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-121KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]