PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_184680_hfws.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 548aa    MW: 61541.3 Da    PI: 6.1971
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_184680_hfws.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.19.7e-1291785481374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+++L+ cA+avs++dl+  ++l+  l +l+s  g+p+qRlaay++e+L+arl +s+ ++y++l++++ +   sse l++++++++ +P++
  Bv8_184680_hfws.t1 178 LKQVLYLCAQAVSENDLSTSETLMDALGNLVSVCGTPIQRLAAYMLEGLRARLESSGYTIYRKLRCEQPT---SSELLSYMHVLYQFCPYF 265
                         5799*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++  N  I eav +e  +HiiDf+i++G+QW++L+q+La+Rp gpp +RiTgv++++s   +   le +g rL+k+Ae++gvpfef++
  Bv8_184680_hfws.t1 266 KFAYMSSNLVIQEAVGNEGSIHIIDFQIGMGTQWISLIQSLANRPCGPPLVRITGVDDSQSAyaRGAGLEVVGLRLSKLAESCGVPFEFHA 356
                         **********************************************************999899999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a +  +++ e+L+v++gE laVn+ ++lh+++desvs+e++rd++L+lvkslsP+vv+v+eqe+ +n+++Fl+rf+e+l+yy+a+f+s+
  Bv8_184680_hfws.t1 357 -AAMSGCQVKRENLKVQSGEFLAVNFPYMLHHMPDESVSTENHRDRLLRLVKSLSPRVVTVTEQESYTNTSPFLQRFAETLDYYTAMFESV 446
                         .89999************************************************************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ++ lpr++++ri+ E ++l+r+ivn+vace aer+erhe ++kWr+r+++aGF+++pls++++++++ l+++++++ +rvee +g+l+lgW
  Bv8_184680_hfws.t1 447 DVALPRDDKKRINAEMHCLARDIVNMVACEDAERVERHEPFGKWRARFSMAGFTQLPLSYSVNESIRGLMKEFHEN-FRVEEWQGALFLGW 536
                         **************************************************************************55.************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         k+r L s S+Wr
  Bv8_184680_hfws.t1 537 KNRILSSSSVWR 548
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.644152529IPR005202Transcription factor GRAS
PfamPF035143.4E-126178548IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MQTSQLNCTT SGVHGFYNQH APEMTPYCSS HYQALNKNMY PDNTTKGNQI ISFQTFDEGF  60
VTLDSSPNIG LYTNYDSPSG VSTSSNRSQV SPQCSQSYIS DPQQSSDNTY GSPTSGSSVV  120
DDNTELRNRL RYLERSLMGP DLPHGSDGHY CSLSHRGNVC ISSSHSNQLM EMLPKMELKQ  180
VLYLCAQAVS ENDLSTSETL MDALGNLVSV CGTPIQRLAA YMLEGLRARL ESSGYTIYRK  240
LRCEQPTSSE LLSYMHVLYQ FCPYFKFAYM SSNLVIQEAV GNEGSIHIID FQIGMGTQWI  300
SLIQSLANRP CGPPLVRITG VDDSQSAYAR GAGLEVVGLR LSKLAESCGV PFEFHAAAMS  360
GCQVKRENLK VQSGEFLAVN FPYMLHHMPD ESVSTENHRD RLLRLVKSLS PRVVTVTEQE  420
SYTNTSPFLQ RFAETLDYYT AMFESVDVAL PRDDKKRINA EMHCLARDIV NMVACEDAER  480
VERHEPFGKW RARFSMAGFT QLPLSYSVNE SIRGLMKEFH ENFRVEEWQG ALFLGWKNRI  540
LSSSSVWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-5318554725377Protein SCARECROW
5b3h_D4e-5318554725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686653.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A0K9RLD00.0A0A0K9RLD0_SPIOL; Uncharacterized protein
STRINGXP_010686653.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13