PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv8_184380_zguo.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | Trihelix | ||||||||
Protein Properties | Length: 400aa MW: 45201 Da PI: 6.6149 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 90.4 | 2e-28 | 289 | 373 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+ +ev+aLi++r +++++r+ +k+p Weevs+ m++ g+ rs+k+Ckekwen+nk+ykk + + kk se+ ++cpyf++le Bv8_184380_zguo.t1 289 RWPTSEVQALITLRAALDDKFRTLGAKAPVWEEVSAGMAKMGYVRSAKKCKEKWENVNKYYKKATGSGKKP-SENAKSCPYFHELE 373 8***************************************************************9999986.78888*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.829 | 282 | 346 | IPR017877 | Myb-like domain |
CDD | cd12203 | 2.81E-26 | 288 | 353 | No hit | No description |
Pfam | PF13837 | 7.5E-21 | 288 | 374 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MEELFSTDRP LPVAGFPEEL TPFPDPEPQP HSSSTVGFFY PQSTPLISSP APQKLRPIRS 60 NGKNPPEYSA SDDALLRING CNSSELGFLQ FQSNLGENGG NFRLPEKLED DTSADALLQM 120 KSEMDAHLIS NFKSQISHLN FSFSSSSDCS GESEHKVEEP SSSGRPRKKR RKRMELFLEN 180 LMSQVIHKQE QMHYQLMDMI EKKEKERITR EEAWHQREME RAKRAEQIRA QEAARSLALI 240 SFIRNALGVT DIQVPELLSL PPVFSGEEIG DPQMLGQGEL DKFDPNNKRW PTSEVQALIT 300 LRAALDDKFR TLGAKAPVWE EVSAGMAKMG YVRSAKKCKE KWENVNKYYK KATGSGKKPS 360 ENAKSCPYFH ELETLYRNRL ITAAKAHSPS NEDPEQNGIL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 172 | RKKRRKR |
2 | 167 | 171 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00552 | DAP | Transfer from AT5G47660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010686620.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2 | ||||
TrEMBL | A0A0K9RK77 | 0.0 | A0A0K9RK77_SPIOL; Uncharacterized protein | ||||
STRING | XP_010686620.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47660.1 | 1e-34 | Trihelix family protein |