PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv8_182430_wwwi.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 156aa MW: 18229.9 Da PI: 9.6566 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.6e-19 | 21 | 72 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++tkeq++ Le+ F+ +r+++ +++ +LA++lg+++rqV +W+qN+Ra++k Bv8_182430_wwwi.t1 21 KRLTKEQVRLLEASFKLDRKLDMDRKFHLAQELGIPTRQVAIWYQNKRARWK 72 679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 103 | 2.5e-33 | 20 | 110 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +rl+keqv+lLE sF+ ++kL+ +rK +la+eLg+ +rqva+W+qn+RAR+k++ lE+ y++L++++++ en+rLekev++L +el++ Bv8_182430_wwwi.t1 20 NKRLTKEQVRLLEASFKLDRKLDMDRKFHLAQELGIPTRQVAIWYQNKRARWKSQSLEMGYKTLQQRLESALVENKRLEKEVQRLSNELEN 110 58************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.1E-18 | 9 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.208 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.4E-16 | 17 | 78 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.9E-16 | 21 | 72 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-19 | 22 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.32E-13 | 22 | 75 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
Gene3D | G3DSA:1.20.5.170 | 1.7E-4 | 82 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MYSPKTTHNK KHEPHPKCTN KRLTKEQVRL LEASFKLDRK LDMDRKFHLA QELGIPTRQV 60 AIWYQNKRAR WKSQSLEMGY KTLQQRLESA LVENKRLEKE VQRLSNELEN MNQMLVASTS 120 TASPNSYVCN EEDASGLMIG DQPNSFFPRD LYACLI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010686481.1 | 1e-115 | PREDICTED: homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A1J6IZQ9 | 4e-46 | A0A1J6IZQ9_NICAT; Homeobox-leucine zipper protein athb-52 | ||||
STRING | XP_010686481.1 | 1e-114 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 6e-32 | homeobox protein 52 |