PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv8_182210_zdgz.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 29589.1 Da PI: 5.1173 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.4e-19 | 114 | 165 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd ++ + +r++lg+f tae+Aa a+++a+++++g+ Bv8_182210_zdgz.t1 114 HYRGVRRRP-WGKYAAEIRDSTK---KgARVWLGTFNTAEDAALAYDKAALRIRGA 165 7********.**********433...34*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 113 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.565 | 114 | 172 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.89E-30 | 114 | 173 | No hit | No description |
SMART | SM00380 | 8.7E-37 | 114 | 178 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-13 | 114 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-23 | 114 | 174 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.8E-11 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MTIKKEEQNH QPPEAILENI WANYVGESTS ENFQDWTEIP CLEEKEVTPY ALQRLPSLGR 60 WMSMGAETWE QLLNGNVIPS TSTNPREEGN ISERGRYDSS ESMGKSNRIV PVRHYRGVRR 120 RPWGKYAAEI RDSTKKGARV WLGTFNTAED AALAYDKAAL RIRGAKACLN FPIEVLNKAI 180 GRQYEPLEEK NGCNPWKRKA RSDWDLQSNY YCNNLMMEQP SLKRSRDNME NSLNAQDDVL 240 ELEDLGSDIL ENLLSLTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-29 | 113 | 175 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010686478.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 1B | ||||
TrEMBL | A0A0K9R646 | 1e-101 | A0A0K9R646_SPIOL; Uncharacterized protein | ||||
STRING | XP_010686478.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 2e-24 | ERF family protein |