PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv8_182060_eqca.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | TCP | ||||||||
Protein Properties | Length: 253aa MW: 28650.1 Da PI: 6.7843 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.4 | 2.2e-29 | 21 | 102 | 3 | 84 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasn 84 +kk rh k++T++g+RdRRvRlsa++a++f+d+qd+LG+ ++ ++++WL+ +a +i++l +tss++ ++ ++ ++s+ + Bv8_182060_eqca.t1 21 AKKARHNKVYTAKGPRDRRVRLSADIAIQFYDVQDRLGYERATEAVDWLMSKARGSIDKLFETSSQQLEHLTNLGAQNSNTF 102 79*************************************************************6665544433333333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-27 | 21 | 95 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.514 | 22 | 80 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSAAQKLVEV QAKHTMMRGS AKKARHNKVY TAKGPRDRRV RLSADIAIQF YDVQDRLGYE 60 RATEAVDWLM SKARGSIDKL FETSSQQLEH LTNLGAQNSN TFHGDYLVES SMSGREDYGV 120 ASFHHNCTTD GSMFFPCYHM ENGSQDQCNA DHSSFSASPC LRCLERSRIS YFQQIDDGKG 180 QIPRMFMFNS KLSLKNEEHP FLSNSVPLFL QPSEIKHYND LSSVHIPSDL DLSLCLPANC 240 LSSFHDSEQY TTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-18 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-18 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021846008.1 | 2e-77 | transcription factor TCP24-like | ||||
Refseq | XP_021846009.1 | 2e-77 | transcription factor TCP24-like | ||||
TrEMBL | A0A0K9R799 | 5e-76 | A0A0K9R799_SPIOL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 6e-30 | TCP domain protein 10 |