PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv8_181400_zguf.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB | ||||||||
Protein Properties | Length: 396aa MW: 44622.4 Da PI: 5.8634 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd++lvd+++++G+g+W+t +++ g+ R++k+c++rw +yl Bv8_181400_zguf.t1 14 KGPWLPEEDQKLVDYIQKHGPGNWRTLPKKAGLERCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Bv8_181400_zguf.t1 67 RGRFTFEEEEAIIQLHSVLGNK-WSAIAAKLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.433 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.17E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.20E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.849 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MGRAPCCDKE GLKKGPWLPE EDQKLVDYIQ KHGPGNWRTL PKKAGLERCG KSCRLRWTNY 60 LRPDIKRGRF TFEEEEAIIQ LHSVLGNKWS AIAAKLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHTRRF EFLDLPSILN NHSSLLQNYS SDNNNNNNNN NNNQLNLLKL LGLQSLVNPT 180 NLLGLASLLS TNQNQNTNFL LQNILANQQI PNPCDQILQN QFINNNNNPI LNSSISPVHN 240 NFADFGDARM MKSSFINQEQ GQYQDNYCNF DAIQQTNPLL NNNEWQNNVS TSMLSLEGEG 300 HVQDMMDSLL DTLSLNNNVA TNGGSHDGQR LPSLFSTPST SQQTPPLSAS NSAAYQPNSS 360 SNTSSEDENN EIDSYCQNLM NFDVPIGLFD SNNNNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-30 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:26139822}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010686262.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q9M0Y5 | 4e-83 | MYB74_ARATH; Transcription factor MYB74 | ||||
TrEMBL | A0A1U8BLQ4 | 1e-105 | A0A1U8BLQ4_NELNU; transcription factor MYB39 | ||||
STRING | XP_010686262.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 2e-87 | MYB-like 102 |
Publications ? help Back to Top | |||
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