PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_180890_fhyg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 294aa    MW: 33352.6 Da    PI: 5.2164
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_180890_fhyg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.25.9e-1529119186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+++ + +Liea  ++  +l+rg+l++++W+ev++ +     + ++ +r+ +qCk++++ l+k+yk +k++  + +   +s +p+f+ l+
  Bv8_180890_fhyg.t1  29 CWSEDATFTLIEAWGQRYIELNRGNLRQKQWQEVADSVnnrhgHVKKARRTDVQCKNRIDTLKKKYKIEKARVLDSNGSYKSPWPFFEPLD 119
                         7*************************************987777777899********************9988776666779****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2527121No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAEGPDSSTP PSLAMISSSS RPVPAREDCW SEDATFTLIE AWGQRYIELN RGNLRQKQWQ  60
EVADSVNNRH GHVKKARRTD VQCKNRIDTL KKKYKIEKAR VLDSNGSYKS PWPFFEPLDQ  120
LIGSTMPLKK LSPSPPMAVP ILAHRTPAIL PQKRPVPSPS PSPSFPASTP PFRGDESYFR  180
KNYSAIAAAA AAAADSDDEE EDEDEEEEEE EVEVSGESSE ADGIRKLAKV IEKFGEVYAR  240
VEAEKQRQMI ELEKQRMQFA KELECQRMQM LVEMQVQLEK MKRAKRSDSN DMYS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686207.10.0PREDICTED: trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A0K9QIZ71e-165A0A0K9QIZ7_SPIOL; Uncharacterized protein
STRINGXP_010686207.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-48sequence-specific DNA binding transcription factors