PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_179140_qzfy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 264aa    MW: 30540.1 Da    PI: 6.314
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_179140_qzfy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-16956148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W +eEde+l+  v+ lG ++W+++ar  g++R++k+c++rw++yl
  Bv7_179140_qzfy.t1  9 KGPWYEEEDERLKAFVAVLGARRWDSVARISGLRRSGKSCRLRWLNYL 56
                        79********************************************97 PP
2Myb_DNA-binding54.72.3e-1763107248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         g+ T+eE+  +v++++++G++ W++Iar+++ gRt++++k++w+++l
  Bv7_179140_qzfy.t1  63 GPITPEEEHVIVKLHERWGNK-WAKIARRLP-GRTDNEIKNYWRTHL 107
                         678******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.2456IPR017930Myb domain
SuperFamilySSF466892.32E-286103IPR009057Homeodomain-like
SMARTSM007171.5E-12858IPR001005SANT/Myb domain
PfamPF002493.9E-14956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-201063IPR009057Homeodomain-like
CDDcd001671.09E-81156No hitNo description
PROSITE profilePS5129426.07657111IPR017930Myb domain
SMARTSM007175.7E-1561109IPR001005SANT/Myb domain
PfamPF002491.4E-1563107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2464111IPR009057Homeodomain-like
CDDcd001671.60E-1064107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MMREENLRKG PWYEEEDERL KAFVAVLGAR RWDSVARISG LRRSGKSCRL RWLNYLRPFL  60
KHGPITPEEE HVIVKLHERW GNKWAKIARR LPGRTDNEIK NYWRTHLRKN MQMKISLPHN  120
STSSKSPSNN IWTVELSSSS DHTNNYSIQS DASLKEGDTI TPEISSNTDN ITSCTDETIG  180
AISGHSSSYN NDDHQKGLIS DCMITNSPYE DRLSDWINLL LKDEETDKCS SSELRLDCPK  240
SWCLGDDSAW DFLDTKWDID LFNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-2571112105C-Myb DNA-Binding Domain
1msf_C4e-2571112105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696302.10.0PREDICTED: transcription factor MYB59
TrEMBLA0A0J8BAR00.0A0A0J8BAR0_BETVU; Uncharacterized protein
STRINGXP_010696302.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.13e-56myb domain protein 27