PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_178080_ocxa.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

G2-like

Protein Properties

Length: 457aa MW: 50474.2 Da PI: 5.4934

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_178080_ocxa.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.9	9.5e-33	238	292	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFveav++L G++kAtPk +l+lm+v+g+t++hvkSHLQkYR Bv7_178080_ocxa.t1 238 KPRMRWTPELHERFVEAVKKLDGPDKATPKGVLKLMNVEGITIYHVKSHLQKYRF 292 79****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.605	235	295	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-31	236	293	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-18	237	292	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-25	238	292	IPR006447	Myb domain, plants
Pfam	PF00249	3.3E-9	240	291	IPR001005	SANT/Myb domain
Pfam	PF14379	3.2E-22	328	373	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MMNHSGRTSL TASDSSKGVT AYCHALPPLD FSCVEECEGS MSSESSYPFL KQSGKLRPPP 60 GPSNILSSSF DSCLKSAPSR SSMFCTNLYL SSSTSSEAQR QLGNLPFLPN PSTPRLTKTQ 120 SLLHDDFDSL CEQKHSEDSF RDFFNYPGSM SDGDFDDVNC GSDSMGFSEQ LELQLLSDEL 180 HLAITDSGEN PGIDEIYEAS PVASKPGIPS TAENKPQPVL PSLNSISGNK TPDTGSHKPR 240 MRWTPELHER FVEAVKKLDG PDKATPKGVL KLMNVEGITI YHVKSHLQKY RFAKYTPERK 300 EEKKNSSSEE KKPHSSTKES DALKKGSINE ALRMQIEVQK QLHEQLEVQR ALQVRIEEHA 360 RYLQMILEEQ QKAQNALVSS QSLSSVTSEE PEAELCHASP SDLSPGSPPK PAESKTDSSS 420 TLPSKHTNED FEKKPCTKRP RLNDEAKPDE PALENSL

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MMNHSGRTSL TASDSSKGVT AYCHALPPLD FSCVEECEGS MSSESSYPFL KQSGKLRPPP  60
GPSNILSSSF DSCLKSAPSR SSMFCTNLYL SSSTSSEAQR QLGNLPFLPN PSTPRLTKTQ  120
SLLHDDFDSL CEQKHSEDSF RDFFNYPGSM SDGDFDDVNC GSDSMGFSEQ LELQLLSDEL  180
HLAITDSGEN PGIDEIYEAS PVASKPGIPS TAENKPQPVL PSLNSISGNK TPDTGSHKPR  240
MRWTPELHER FVEAVKKLDG PDKATPKGVL KLMNVEGITI YHVKSHLQKY RFAKYTPERK  300
EEKKNSSSEE KKPHSSTKES DALKKGSINE ALRMQIEVQK QLHEQLEVQR ALQVRIEEHA  360
RYLQMILEEQ QKAQNALVSS QSLSSVTSEE PEAELCHASP SDLSPGSPPK PAESKTDSSS  420
TLPSKHTNED FEKKPCTKRP RLNDEAKPDE PALENSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-25	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-25	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-25	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-25	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-25	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-25	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-25	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-25	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010696145.1	0.0	PREDICTED: myb family transcription factor PHL6
Swissprot	Q949U2	1e-106	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A0K9QTS5	0.0	A0A0K9QTS5_SPIOL; Uncharacterized protein
STRING	XP_010696145.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	2e-87	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]