PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv7_177580_nrxi.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | LBD | ||||||||
Protein Properties | Length: 148aa MW: 17196.7 Da PI: 7.9028 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.7 | 9.6e-39 | 6 | 103 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaC++lrrkC+kdC++ pyfp+ + ++fa+vhk+FGasn+ k+lk+lpee+r++a++slv eA+ r+rdPvyG+vg+i++l +q+++++ Bv7_177580_nrxi.t1 6 RCAACRYLRRKCPKDCIFGPYFPSINLERFACVHKIFGASNIAKMLKQLPEERRKEAAESLVQEARSRVRDPVYGSVGTITQLIEQIMEAE 96 6****************************************************************************************** PP DUF260 92 aelallk 98 ela+++ Bv7_177580_nrxi.t1 97 YELAKTQ 103 ***9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.237 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-38 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MSNSIRCAAC RYLRRKCPKD CIFGPYFPSI NLERFACVHK IFGASNIAKM LKQLPEERRK 60 EAAESLVQEA RSRVRDPVYG SVGTITQLIE QIMEAEYELA KTQGLIALFH AQYLREHQHN 120 YIEPFNKTLT AQIQDDLHFD HFTVESYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-30 | 7 | 99 | 12 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-30 | 7 | 99 | 12 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021761801.1 | 4e-76 | LOB domain-containing protein 24-like | ||||
Swissprot | P59467 | 6e-44 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
TrEMBL | A0A0J8B881 | 1e-107 | A0A0J8B881_BETVU; Uncharacterized protein | ||||
STRING | XP_010278070.1 | 3e-48 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 2e-46 | LOB domain-containing protein 23 |