PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_176150_dhtu.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bZIP

Protein Properties

Length: 514aa MW: 57288 Da PI: 8.113

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_176150_dhtu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.3	2.2e-10	205	237	4	36
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 k rr+++NReAAr+sR+RKka++++Le Bv7_176150_dhtu.t1 205 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRI 237 6889************************97544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.8E-4	202	269	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-7	204	248	No hit	No description
PROSITE profile	PS50217	9.14	204	248	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-7	205	245	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.55E-6	206	247	No hit	No description
CDD	cd14708	1.17E-21	206	256	No hit	No description
PROSITE pattern	PS00036	0	209	224	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.0E-31	291	366	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MASSHRLGET GLSQSGPSSN HHNIPFAVPH HGIINPTTSN PFMNQGGSSF DFGELEQAIV 60 LQGVKIGHHE AKSSLFGARP AATLEMFPSW PMRFQQTNRG SSKSGGESTT DDSGSAINTF 120 SSSQAETHHL EQPESPMSRK PTTEQQQQQN QQQQQQQQQQ ACSFQQHQQH QQPGMASDAS 180 RTGISQKQPQ EKRQGGIKSD KVLDAKTLRR LAQNREAARK SRLRKKAYVQ QLESSRIKLA 240 QLEQDLQRAR AQGYFLGGGG GAPANLSSDG AAGAAIFDME YARWLEDDHR HTTELRGALQ 300 AHLSDGDLRI IVDGYINHYD EIFRLKGVAA KSDIFHLITG MWTTPAERCF LWMGGFRPSE 360 LIKMLTAQLD PLTEQQLMGI YSLQHSSQQA EEALSQGLEQ LQQSLVDTIA TSTVTDGMHQ 420 MAIALGKLSN LEGFIRQADN LRQQTLHQLR RILTIRQAAR CFLVIGEYYG RLRALSSLWS 480 SRPREHMMSN DNGCQTAQDL QMVQPHQQNH FSPF

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MASSHRLGET GLSQSGPSSN HHNIPFAVPH HGIINPTTSN PFMNQGGSSF DFGELEQAIV  60
LQGVKIGHHE AKSSLFGARP AATLEMFPSW PMRFQQTNRG SSKSGGESTT DDSGSAINTF  120
SSSQAETHHL EQPESPMSRK PTTEQQQQQN QQQQQQQQQQ ACSFQQHQQH QQPGMASDAS  180
RTGISQKQPQ EKRQGGIKSD KVLDAKTLRR LAQNREAARK SRLRKKAYVQ QLESSRIKLA  240
QLEQDLQRAR AQGYFLGGGG GAPANLSSDG AAGAAIFDME YARWLEDDHR HTTELRGALQ  300
AHLSDGDLRI IVDGYINHYD EIFRLKGVAA KSDIFHLITG MWTTPAERCF LWMGGFRPSE  360
LIKMLTAQLD PLTEQQLMGI YSLQHSSQQA EEALSQGLEQ LQQSLVDTIA TSTVTDGMHQ  420
MAIALGKLSN LEGFIRQADN LRQQTLHQLR RILTIRQAAR CFLVIGEYYG RLRALSSLWS  480
SRPREHMMSN DNGCQTAQDL QMVQPHQQNH FSPF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010686011.1	0.0	PREDICTED: transcription factor TGA2.2 isoform X1
Refseq	XP_010686012.1	0.0	PREDICTED: transcription factor TGA2.2 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A0K9RCX9	0.0	A0A0K9RCX9_SPIOL; Uncharacterized protein
STRING	XP_010686011.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-175	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]