PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_175800_ycqe.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 909aa    MW: 99734.4 Da    PI: 7.5717
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_175800_ycqe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.99e-19330430199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k+l+ sd+++ grlvlpk +ae++   +++ e+  l+++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Bv7_175800_ycqe.t1 330 FEKILSASDASRIGRLVLPKACAEAYfpTINQSEGLPLKIQDIKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID- 418
                         99**************************666667778***************9989999999***9.********************987. PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                          +++lv++ +++
  Bv7_175800_ycqe.t1 419 PGGKLVIGYRKA 430
                         899999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-20327429IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-28327431IPR015300DNA-binding pseudobarrel domain
CDDcd100175.38E-23328429No hitNo description
PROSITE profilePS5086311.082330431IPR003340B3 DNA binding domain
PfamPF023624.9E-16330429IPR003340B3 DNA binding domain
SMARTSM010191.3E-21330430IPR003340B3 DNA binding domain
PROSITE profilePS5105014.181593643IPR011124Zinc finger, CW-type
PfamPF074968.9E-12598640IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MGSRTCMNTS CGAKATVQWK KGWELKSGEI ADLCFKCGSA YENLVYCDTF HAEETGWREC  60
SLCNKRLHCG CSASVTVIEI QDFGGVWCIS CATSAGCHPT KRDGSFSDAQ TSGKYSIAGD  120
VQKSQLNSKL ETNAIGNVNL LSMGNVIETN VPRYLPQSPH DLMNGSFGPI KPDAKSSSIG  180
VGGLGFANIS HSVSGPALHA QPNEDKPNTG VKDVQEPQMP SLNISLRSPS ETPNFGLSFS  240
GGVEEGENSR STGLFQSGQR PRQILPKPPK NNLAKVSDTN KGSFSPMRVA RPPAEGRLRN  300
QLLPRYWPRI TDQELQKLSG DLKTTIVPLF EKILSASDAS RIGRLVLPKA CAEAYFPTIN  360
QSEGLPLKIQ DIKGNEWTFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPG  420
GKLVIGYRKA SNALESQDPQ TSSANPNGAA SGDSCYPDAT DSVSARNGHC GLQSMAGAKD  480
SELSALPEQS NLVNGSTVWG KSEKLKGKGR EDVVEQPKLP SDKKRMRNIK SKRLLMHNDD  540
AMELRLTWEE TQDLLRPPPN VKPNIIMVED FEFEEYSEPP VVGKRTFFTT QLSGGQEQWA  600
QCDNCLKWRK LPADVLLPSK WTCSENIWDS SRSSCSSQEE TSPKELDNVF KGSKDSKKRK  660
VAESPEQGCE PSGLDALATA ATLGDHEEPS AGATTRHPRH RPGCTCIVCI QPPSGKGKHK  720
PSCVCNVCLT VKRRFKTLMM RKKKRQCERE AEMAQQKSNT EHQIKGSHQV IKKTSPNDIM  780
SDKKDYVENE KVQEKSQPEE GESSSKGHID LNAHPIREDD SNVDAQPSMG IMALAQAASA  840
PLDNMYMKPN GLSNLLSKQP MDTDTCLLQK ACDYVDRCLL PKDEHHSSVV NDQEQSKADG  900
EASKKPTLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-683084372131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1731742KRRFKTLMMRKK
2731744KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685978.10.0PREDICTED: B3 domain-containing transcription repressor VAL1
TrEMBLA0A0K9Q9G10.0A0A0K9Q9G1_SPIOL; Uncharacterized protein
STRINGXP_010685978.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2