PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_175790_dsuf.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bZIP

Protein Properties

Length: 386aa MW: 42515.9 Da PI: 5.969

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_175790_dsuf.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	3.8e-10	186	244	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l ++ l se+ Bv7_175790_dsuf.t1 186 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLYQRDTTGLSSEN 244 9*****************************************99999888777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-16	182	246	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.53	184	247	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.09E-10	186	237	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-7	186	241	No hit	No description
Pfam	PF00170	4.0E-9	186	244	IPR004827	Basic-leucine zipper domain
CDD	cd14703	7.47E-25	187	236	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MEMKRDPPLP TSISTPDING NPTKPSPSSN GGNNVNTSAN SSLFSPSPNP NPFRGPHHRR 60 AHSEVSFRFS DDMDLSSDPF TGSSTEEIGS EDDLFTTYID VDKLGASGSA ASQPSDDFNV 120 AIGLSVDGDH RIPTNNNSSD ARPRHRYSNS VDAATSSASG AFGEIMDAKK AMPPDKLAEL 180 WTIDPKRAKR ILANRQSAAR SKERKARYIL ELERKVQTLQ TEATTLSAQL TLYQRDTTGL 240 SSENTELKLR LQAMEQQAQL RDALNEALKH EVERLRMATG EMMEPSESFN LGMPSMQYNP 300 SVFYSVPQQQ QQQQQNMQLP SYHQSQGNMH HMNNIHSHNM NSQNPLEFMP NDPLGRLQGL 360 DISSRGSPVV KSEGASMSAS ESSSTF

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MEMKRDPPLP TSISTPDING NPTKPSPSSN GGNNVNTSAN SSLFSPSPNP NPFRGPHHRR  60
AHSEVSFRFS DDMDLSSDPF TGSSTEEIGS EDDLFTTYID VDKLGASGSA ASQPSDDFNV  120
AIGLSVDGDH RIPTNNNSSD ARPRHRYSNS VDAATSSASG AFGEIMDAKK AMPPDKLAEL  180
WTIDPKRAKR ILANRQSAAR SKERKARYIL ELERKVQTLQ TEATTLSAQL TLYQRDTTGL  240
SSENTELKLR LQAMEQQAQL RDALNEALKH EVERLRMATG EMMEPSESFN LGMPSMQYNP  300
SVFYSVPQQQ QQQQQNMQLP SYHQSQGNMH HMNNIHSHNM NSQNPLEFMP NDPLGRLQGL  360
DISSRGSPVV KSEGASMSAS ESSSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685977.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	O22873	1e-105	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A0K9QEM3	0.0	A0A0K9QEM3_SPIOL; Uncharacterized protein
STRING	XP_010685977.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-96	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]