PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_174540_ksge.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 213aa    MW: 24709.6 Da    PI: 8.2022
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_174540_ksge.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-182570148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg++T+ E++l ++++ q+G++ W++Iar+++ gRt++++k++w++++
  Bv7_174540_ksge.t2 25 RGKMTPHEEKLVLELHSQWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 70
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.681119IPR017877Myb-like domain
SuperFamilySSF466891.0E-21575IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-9531IPR009057Homeodomain-like
PROSITE profilePS5129425.6162074IPR017930Myb domain
SMARTSM007171.9E-162472IPR001005SANT/Myb domain
PfamPF002491.9E-152569IPR001005SANT/Myb domain
CDDcd001671.47E-112770No hitNo description
Gene3DG3DSA:1.10.10.606.6E-203271IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MIGLKRTGKS CRLRWVNYLH PGLKRGKMTP HEEKLVLELH SQWGNRWSRI ARRLPGRTDN  60
EIKNYWRTHM RKKAQEKKQE TSPSSSSSTS TTSNSFSSSN IRAVNSKIAT ETTESFDSTV  120
PDISALQGKK YQKDESEEEE YYSMDDIWKD ITSEEPIKPV FSGYSDRPPM ASPLWEYCPD  180
TLWRMEGDES KMFFSPSDQF VTSYQHENMS LTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-1767437105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-1767460128MYB TRANSFORMING PROTEIN
1mse_C1e-1767437105C-Myb DNA-Binding Domain
1msf_C1e-1767437105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106571.11e-159PREDICTED: transcription factor MYB59 isoform X2
SwissprotQ4JL842e-64MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A0K9QEZ61e-122A0A0K9QEZ6_SPIOL; Uncharacterized protein
STRINGXP_010685834.11e-155(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.22e-61myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]