PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_173670_ugqo.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

GRAS

Protein Properties

Length: 747aa MW: 84376.4 Da PI: 5.1399

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_173670_ugqo.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	347.9	1.6e-106	377	745	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 + lL++cA++v++ dl a ++L+++++++sp+gd +qR+a+y++++L+arl +++ el + +e s se+l+a ++++ P+ Bv7_173670_ugqo.t1 377 RGLLTRCAQCVAQVDLISAYEMLKQIRQHSSPHGDFLQRVAHYLANGLEARLEGNGLELTH--VNKEIS---PSEVLKANRIYVASVPFQI 462 679*************************************************6666554..333333...5799*********** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +s+ t N++I ve++ +HiiDf+i +GlQWp+++q L++Rp+gpp++RiTg++ p++g +e++eetg+ Lak++e+ +vpfe+ + Bv7_173670_ugqo.t1 463 MSFYTMNKTIAGLVEEAPSIHIIDFGIYYGLQWPCIIQNLSKRPNGPPRIRITGIDLPQEGfrPSERIEETGRCLAKYCEKYNVPFEYCP- 552 ********************************************************9*************************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +ak++ed++leeL+++++E l+Vn+ ++ h+l+desv+ +s+rd++Lklvk++sP+++ ++ ++ + + Fl+rf ea+ +ysalfd +e Bv7_173670_ugqo.t1 553 IAKKWEDVQLEELKIERNEPLVVNCLYRAHQLFDESVEENSPRDKFLKLVKKISPDIFLHAVVNSTSSVPFFLNRFKEAMFHYSALFDIFE 643 7************************************************************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 ++++re++er +E +l g+++ nv+aceg er+er e++++W+ r ++aGFk+v l+ + a++++r+ +++ +e+ ++v+gWk Bv7_173670_ugqo.t1 644 STMSREDSERLLLESKLYGPQALNVIACEGIERVERPESYKQWQIRTQRAGFKQVGLDRELLRRARAMVRRSFRPEFSYDEDGFWVVQGWK 734 *******************************************************************99999*********** PP GRAS 364 drpLvsvSaWr 374 +r L+++S+W+ Bv7_173670_ugqo.t1 735 GRILYAISCWK 745 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.006	350	725	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.7E-104	377	745	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence Send to blast
MNLYGFNPEI ISCQSFVSDQ EIENPSFQNY NNNDQQLIEV SAQVQPFNNE CQIVPYHHHL 60 SQLQFDSLLD PTEVPDIPDT CFNYINDLLR EEYHSQDDYI DTPNSTLEDY MAAQMSYKSL 120 DVAASNLLGE NNFSFPFSAN NLHQNPPSDL SQTCLDDYYN MFSSIISNSI PLHSYPPSVI 180 SANHSIVHNT SFVGNLNDGS FGCSLPLVES CNGVGSIPAP VNVINGGGGG RREGGGGEAN 240 HSEEAAFAFL MNDINVHEQG NMNLYTNTAT LFQDQSGNSN VPISGNGGSF TDNSRRRKHD 300 EGENNQDTNG RNNKNLAPSN DDVKEQIEQY GDVILCPEGR SKPGALCNNR CKPQNSGDDS 360 SKVSKKRGNK VQVVDLRGLL TRCAQCVAQV DLISAYEMLK QIRQHSSPHG DFLQRVAHYL 420 ANGLEARLEG NGLELTHVNK EISPSEVLKA NRIYVASVPF QIMSFYTMNK TIAGLVEEAP 480 SIHIIDFGIY YGLQWPCIIQ NLSKRPNGPP RIRITGIDLP QEGFRPSERI EETGRCLAKY 540 CEKYNVPFEY CPIAKKWEDV QLEELKIERN EPLVVNCLYR AHQLFDESVE ENSPRDKFLK 600 LVKKISPDIF LHAVVNSTSS VPFFLNRFKE AMFHYSALFD IFESTMSRED SERLLLESKL 660 YGPQALNVIA CEGIERVERP ESYKQWQIRT QRAGFKQVGL DRELLRRARA MVRRSFRPEF 720 SYDEDGFWVV QGWKGRILYA ISCWKPV

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence Send to blast

MNLYGFNPEI ISCQSFVSDQ EIENPSFQNY NNNDQQLIEV SAQVQPFNNE CQIVPYHHHL  60
SQLQFDSLLD PTEVPDIPDT CFNYINDLLR EEYHSQDDYI DTPNSTLEDY MAAQMSYKSL  120
DVAASNLLGE NNFSFPFSAN NLHQNPPSDL SQTCLDDYYN MFSSIISNSI PLHSYPPSVI  180
SANHSIVHNT SFVGNLNDGS FGCSLPLVES CNGVGSIPAP VNVINGGGGG RREGGGGEAN  240
HSEEAAFAFL MNDINVHEQG NMNLYTNTAT LFQDQSGNSN VPISGNGGSF TDNSRRRKHD  300
EGENNQDTNG RNNKNLAPSN DDVKEQIEQY GDVILCPEGR SKPGALCNNR CKPQNSGDDS  360
SKVSKKRGNK VQVVDLRGLL TRCAQCVAQV DLISAYEMLK QIRQHSSPHG DFLQRVAHYL  420
ANGLEARLEG NGLELTHVNK EISPSEVLKA NRIYVASVPF QIMSFYTMNK TIAGLVEEAP  480
SIHIIDFGIY YGLQWPCIIQ NLSKRPNGPP RIRITGIDLP QEGFRPSERI EETGRCLAKY  540
CEKYNVPFEY CPIAKKWEDV QLEELKIERN EPLVVNCLYR AHQLFDESVE ENSPRDKFLK  600
LVKKISPDIF LHAVVNSTSS VPFFLNRFKE AMFHYSALFD IFESTMSRED SERLLLESKL  660
YGPQALNVIA CEGIERVERP ESYKQWQIRT QRAGFKQVGL DRELLRRARA MVRRSFRPEF  720
SYDEDGFWVV QGWKGRILYA ISCWKPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-47	382	746	25	380	Protein SCARECROW
5b3h_A	2e-47	382	746	24	379	Protein SCARECROW
5b3h_D	2e-47	382	746	24	379	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	236	GGRREGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010686165.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A0K9QWW8	0.0	A0A0K9QWW8_SPIOL; Uncharacterized protein
STRING	XP_010686165.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46600.2	1e-137	GRAS family protein