PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_173660_rmpw.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

GRAS

Protein Properties

Length: 696aa MW: 78833.9 Da PI: 5.4788

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_173660_rmpw.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	361.6	1.2e-110	322	693	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++cA+avss dl+ a+++L+++++++sp+gd++qRla++++++L+arla+++s++++ + + s sse l+a+k+++ + P+ Bv7_173660_rmpw.t1 322 LRTLLIQCAQAVSSFDLRTANEVLKQIRQNSSPYGDSIQRLAHHVANGLEARLAGTGSTVSSDICDIRVS---SSEFLKAYKVYVTAIPFK 409 6789*************************************************999999998666666...89************ PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 ++s+ +aN+aIl+ ve+++++HiiDf+i GlQWp+++qaL++R++gpp+lR+Tg++ p++g +e++++tg+rL+ ++e++gvpf+++ Bv7_173660_rmpw.t1 410 RMSYYVANNAILKLVEKATKIHIIDFGIFLGLQWPCFIQALSKRSNGPPQLRMTGIDFPQQGfrPAERVSATGRRLSGYCERFGVPFQYQG 500 *********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a+++e++++e+L+++ +E ++Vn++l+ +llde+v+ +s+rd +Lklv++l+P+++++ + +++ F +rf eal +ys++f+ Bv7_173660_rmpw.t1 501 -IADKWENIKPEDLKIECDELVIVNCMLRSGTLLDETVDANSPRDGFLKLVRNLNPHLFIHGIVNGTFTAPFFINRFKEALFHYSSVFELC 590 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +a+lpre++er vE e+ g+e++nvvacegaer++r et+++W+ r +aG+++ pl+ + +++ak +++ + + + v+e++ ++++gW Bv7_173660_rmpw.t1 591 DATLPREAHERLLVESEIYGKELMNVVACEGAERVQRPETYKQWQVRAARAGLRQFPLDRSLVSKAKDMVKANYHEDFLVDEDRLWMLQGW 681 **********************************************************************999********** PP GRAS 363 kdrpLvsvSaWr 374 k+r ++S+W+ Bv7_173660_rmpw.t1 682 KGRIFCALSFWQ 693 *********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.665	296	673	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-108	322	693	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence Send to blast
MNSVLVDSDF MNNIFKLNPE MFLNFPKNPT FENIFQTPDF VDPQTLQFDQ NESKISLETP 60 DLIHLDTLSL DQNESKITSK VPDFPDNCLK FISDILLEEN LDKNPASAQE YRALQATEKS 120 LYDVLGESYP YTYTPSDFLP SFLNQNPDTP DGSSSSDKSF SSFESNLGLK QSELVDSIVN 180 VDDYVHSFLD LNHQYSGSSS EDAEDGVVNE AITPNKLLMT TPNTGEKPVK GLRRKKSRRR 240 DDATHDQGGR SNKVQAASSE DYVEMEQYDD VLLCKEFNHN TSTSFDACSA GERRVNLSKI 300 GGDRSRKTRG KKQNIKVEEV DLRTLLIQCA QAVSSFDLRT ANEVLKQIRQ NSSPYGDSIQ 360 RLAHHVANGL EARLAGTGST VSSDICDIRV SSSEFLKAYK VYVTAIPFKR MSYYVANNAI 420 LKLVEKATKI HIIDFGIFLG LQWPCFIQAL SKRSNGPPQL RMTGIDFPQQ GFRPAERVSA 480 TGRRLSGYCE RFGVPFQYQG IADKWENIKP EDLKIECDEL VIVNCMLRSG TLLDETVDAN 540 SPRDGFLKLV RNLNPHLFIH GIVNGTFTAP FFINRFKEAL FHYSSVFELC DATLPREAHE 600 RLLVESEIYG KELMNVVACE GAERVQRPET YKQWQVRAAR AGLRQFPLDR SLVSKAKDMV 660 KANYHEDFLV DEDRLWMLQG WKGRIFCALS FWQPSL

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence Send to blast

MNSVLVDSDF MNNIFKLNPE MFLNFPKNPT FENIFQTPDF VDPQTLQFDQ NESKISLETP  60
DLIHLDTLSL DQNESKITSK VPDFPDNCLK FISDILLEEN LDKNPASAQE YRALQATEKS  120
LYDVLGESYP YTYTPSDFLP SFLNQNPDTP DGSSSSDKSF SSFESNLGLK QSELVDSIVN  180
VDDYVHSFLD LNHQYSGSSS EDAEDGVVNE AITPNKLLMT TPNTGEKPVK GLRRKKSRRR  240
DDATHDQGGR SNKVQAASSE DYVEMEQYDD VLLCKEFNHN TSTSFDACSA GERRVNLSKI  300
GGDRSRKTRG KKQNIKVEEV DLRTLLIQCA QAVSSFDLRT ANEVLKQIRQ NSSPYGDSIQ  360
RLAHHVANGL EARLAGTGST VSSDICDIRV SSSEFLKAYK VYVTAIPFKR MSYYVANNAI  420
LKLVEKATKI HIIDFGIFLG LQWPCFIQAL SKRSNGPPQL RMTGIDFPQQ GFRPAERVSA  480
TGRRLSGYCE RFGVPFQYQG IADKWENIKP EDLKIECDEL VIVNCMLRSG TLLDETVDAN  540
SPRDGFLKLV RNLNPHLFIH GIVNGTFTAP FFINRFKEAL FHYSSVFELC DATLPREAHE  600
RLLVESEIYG KELMNVVACE GAERVQRPET YKQWQVRAAR AGLRQFPLDR SLVSKAKDMV  660
KANYHEDFLV DEDRLWMLQG WKGRIFCALS FWQPSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-52	326	693	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	240	RRKKSRRRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685735.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A0K9QTP6	0.0	A0A0K9QTP6_SPIOL; Uncharacterized protein
STRING	XP_010685735.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-156	SCARECROW-like 14