PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_173650_gxyt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 687aa    MW: 77413.7 Da    PI: 5.157
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_173650_gxyt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.22.9e-1103126831374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL +cA+avss dl+ a++ L+++++++sp+gd++qRla+yf+++L+arla+++s+++  +   + s   ss+ l+a+++++ + P+ 
  Bv7_173650_gxyt.t1 312 LRTLLNHCAQAVSSFDLRVANERLKQIRQHSSPYGDSIQRLAHYFANGLEARLAGTGSTISGNIVDARIS---SSDFLKAYRTYVSAIPFK 399
                         5789***************************************************999999888777777...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         ++s+++ N+ Il+ +e+++++HiiDf++  GlQWp+L+q La+Rp+gp +lRiTgv+ p++g   +e++e+tg+rLa ++e+++vpf++++
  Bv7_173650_gxyt.t1 400 RMSFFMVNNEILKLAEKATKIHIIDFGVLLGLQWPCLIQNLAKRPGGPVKLRITGVDYPQQGfrPAERVEATGRRLAGYCERFNVPFQYQA 490
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a++++++++e+ +++ +E ++Vn++++   llde+v+ +s++d++L+l+k+l+P ++++   +   n++ F +rf ea+ +ysa+fd +
  Bv7_173650_gxyt.t1 491 -IAQKWDSIRPEDVKIEGDELVIVNCMFRSGILLDETVEADSQKDAFLRLIKQLNPCLFIHGVTNGTFNAPFFITRFREAIFHYSAVFDIF 580
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         e+++pre++ r+ +E e+ g+e  nv+aceg+er++r et+++W+ r ++aGFk+++l+ +    ak++ +  + + + v+e+++++++gW
  Bv7_173650_gxyt.t1 581 EETIPREDHGRMLLESEVYGKETLNVIACEGTERIQRPETYKQWQVRTTRAGFKQLSLNRELFGRAKAMAKGNYHKDFVVDEDRNWMLQGW 671
                         **************************************************************************888************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         k+r+L ++S W+
  Bv7_173650_gxyt.t1 672 KGRTLCALSIWQ 683
                         ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.263286663IPR005202Transcription factor GRAS
PfamPF035141.0E-107312683IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MYPVLVDPEL ENMSHELKYN PELLSNFFTH QDFGNGISLG EIFDNNNLVD QKPQSVDFNE  60
SCISSDSLDA PDFSDACLKF LSDILEENLD EIPASVQDVR ALEATEKSLY DALGENYSPS  120
GDLTSSLDQS TENPEFSFTR SWDSSYGIKG YVDGETAIDS HSGLNQTPAE PILSLSDLSH  180
PLLKQDSQSS RSSNSDDCTD GLATSPASTL TSVPLEREDK VVSRSRRKNR HRDDGAYGGG  240
RSNKQQASSN EDYVEMEQYD DILLCREDLN DLSLRDKESS TNGISKKLQG KGSKGKISRG  300
KKQNDVVEQV DLRTLLNHCA QAVSSFDLRV ANERLKQIRQ HSSPYGDSIQ RLAHYFANGL  360
EARLAGTGST ISGNIVDARI SSSDFLKAYR TYVSAIPFKR MSFFMVNNEI LKLAEKATKI  420
HIIDFGVLLG LQWPCLIQNL AKRPGGPVKL RITGVDYPQQ GFRPAERVEA TGRRLAGYCE  480
RFNVPFQYQA IAQKWDSIRP EDVKIEGDEL VIVNCMFRSG ILLDETVEAD SQKDAFLRLI  540
KQLNPCLFIH GVTNGTFNAP FFITRFREAI FHYSAVFDIF EETIPREDHG RMLLESEVYG  600
KETLNVIACE GTERIQRPET YKQWQVRTTR AGFKQLSLNR ELFGRAKAMA KGNYHKDFVV  660
DEDRNWMLQG WKGRTLCALS IWQPCYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-493126835375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685730.10.0PREDICTED: scarecrow-like protein 34
TrEMBLA0A0K9QAZ30.0A0A0K9QAZ3_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010685730.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-156SCARECROW-like 14