PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_173640_npoz.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

GRAS

Protein Properties

Length: 687aa MW: 77371.8 Da PI: 5.0038

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_173640_npoz.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365.8	5.8e-112	314	685	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL +cA+avss dl+ a++ L+++++++sp+gd++qRla+yf+++L+arla+++s+++ + + s ss+ l+a+++++ + P+ Bv7_173640_npoz.t1 314 LRTLLNHCAQAVSSFDLRVANERLKQIRQHSSPYGDSIQRLAHYFANGLEARLAGTGSTISGNIVDARIS---SSDFLKAYRTYVSAIPCK 401 5789*************************************************999999888777777...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 ++s+++aN+ Il+ +e+++++HiiDf++ GlQWp+L+q La+Rp+gp +lRiTg++ p++g +e++e+tg+rLa ++++++vpf++++ Bv7_173640_npoz.t1 402 RMSFFMANNKILKLAEKATKIHIIDFGVLLGLQWPCLIQNLAKRPGGPVKLRITGIDYPQQGfrPAERVEATGRRLAGYCDRFNVPFQYQA 492 *********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a++++++++e+ +++ +E ++Vn++++ +llde+v+ +s++d +L+l+k+l+P ++++ + n++ F++rf ea+ +ysa+fd + Bv7_173640_npoz.t1 493 -IAQKWDSIRPEDVKIEGDELVIVNCMFRSGTLLDETVEADSQKDGFLRLIKQLNPSLFIHGIMNGTFNAPFFVTRFKEAIFHYSAMFDVF 582 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 e+++pre++ r +E el g+e nv+aceg+er++r et+++W+ r ++aGFk+++l+ + k++++ + + + v+e+++++++gW Bv7_173640_npoz.t1 583 EETIPREDHGRLLIESELCGKESLNVIACEGNERIQRPETYKQWQVRTRRAGFKQLSLDRELLGRTKAMVKANYHKDFVVDEDRNWMLQGW 673 **********************************************************************888********** PP GRAS 363 kdrpLvsvSaWr 374 k+r+L ++S W+ Bv7_173640_npoz.t1 674 KGRTLCALSIWQ 685 *********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.364	288	665	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-109	314	685	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MYPVLVDPEL ESLSYEFKYN PELLSNFFTH QDFGNGISLG EIFENNTLVD QKPQSVEFNE 60 SCISSDSLDA PDFSDACLKF LSDILLEENL DEIPASVQDV RALEATEKSL YDALGEEYSP 120 SDDLTSFLDQ SIENPDVSFE RSWDSSYRFE GYSNGDTAIE SNLGMNQTPS EPIISLSDLS 180 HPLLKQNSQS SGSSNSDDCA DGVATSPAST LTSVPLERED KVVSRSRRKK NHKRDDGAYG 240 GGRSNKQQAS TNEDYVEMEQ YDDILLCRED LNDLSLCDKE SSANGISKKL QGKGSKGKTT 300 RGKKQNNVVE EVDLRTLLNH CAQAVSSFDL RVANERLKQI RQHSSPYGDS IQRLAHYFAN 360 GLEARLAGTG STISGNIVDA RISSSDFLKA YRTYVSAIPC KRMSFFMANN KILKLAEKAT 420 KIHIIDFGVL LGLQWPCLIQ NLAKRPGGPV KLRITGIDYP QQGFRPAERV EATGRRLAGY 480 CDRFNVPFQY QAIAQKWDSI RPEDVKIEGD ELVIVNCMFR SGTLLDETVE ADSQKDGFLR 540 LIKQLNPSLF IHGIMNGTFN APFFVTRFKE AIFHYSAMFD VFEETIPRED HGRLLIESEL 600 CGKESLNVIA CEGNERIQRP ETYKQWQVRT RRAGFKQLSL DRELLGRTKA MVKANYHKDF 660 VVDEDRNWML QGWKGRTLCA LSIWQPC

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MYPVLVDPEL ESLSYEFKYN PELLSNFFTH QDFGNGISLG EIFENNTLVD QKPQSVEFNE  60
SCISSDSLDA PDFSDACLKF LSDILLEENL DEIPASVQDV RALEATEKSL YDALGEEYSP  120
SDDLTSFLDQ SIENPDVSFE RSWDSSYRFE GYSNGDTAIE SNLGMNQTPS EPIISLSDLS  180
HPLLKQNSQS SGSSNSDDCA DGVATSPAST LTSVPLERED KVVSRSRRKK NHKRDDGAYG  240
GGRSNKQQAS TNEDYVEMEQ YDDILLCRED LNDLSLCDKE SSANGISKKL QGKGSKGKTT  300
RGKKQNNVVE EVDLRTLLNH CAQAVSSFDL RVANERLKQI RQHSSPYGDS IQRLAHYFAN  360
GLEARLAGTG STISGNIVDA RISSSDFLKA YRTYVSAIPC KRMSFFMANN KILKLAEKAT  420
KIHIIDFGVL LGLQWPCLIQ NLAKRPGGPV KLRITGIDYP QQGFRPAERV EATGRRLAGY  480
CDRFNVPFQY QAIAQKWDSI RPEDVKIEGD ELVIVNCMFR SGTLLDETVE ADSQKDGFLR  540
LIKQLNPSLF IHGIMNGTFN APFFVTRFKE AIFHYSAMFD VFEETIPRED HGRLLIESEL  600
CGKESLNVIA CEGNERIQRP ETYKQWQVRT RRAGFKQLSL DRELLGRTKA MVKANYHKDF  660
VVDEDRNWML QGWKGRTLCA LSIWQPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-49	321	686	26	380	Protein SCARECROW
5b3h_A	1e-49	321	686	25	379	Protein SCARECROW
5b3h_D	1e-49	321	686	25	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019106559.1	0.0	PREDICTED: scarecrow-like protein 34
TrEMBL	A0A0K9QAZ3	0.0	A0A0K9QAZ3_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010685731.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-166	GRAS family protein