PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_173630_utzy.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

GRAS

Protein Properties

Length: 681aa MW: 76758.9 Da PI: 4.7777

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_173630_utzy.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	369.9	3.5e-113	310	679	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lL +cA+avss dl+ a++ L+++++++sp+gd++qRla+yf+++L+arla+++s+++ + + s ss+ ++a+++++ + P+ ++ Bv7_173630_utzy.t1 310 TLLNHCAQAVSSFDLRVANERLKQIRQHSSPYGDSIQRLAHYFANGLEARLASTGSTISGNIVDARMS---SSDLFKAYRTYVSAIPYQRL 397 689************************************************999999888777766...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 +++aN aIl+ +e+++++HiiDf++ GlQWp+L+q La+Rp+gp+ lRiTg++ p++g +e++e+tg+rLa ++e++ vpf++++ + Bv7_173630_utzy.t1 398 NFFMANTAILKLAEKATKIHIIDFGVYLGLQWPCLIQNLAKRPGGPAILRITGIDYPQQGfrPAERVEATGRRLAGYCERFSVPFQYQA-I 487 *******************************************************9*************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 a++l+ +++++++++ +E +++n++ + +l+de+v+ +s++d++Lkl+k+l+P+++++ + n++ F +rf ea+ +ysa+fd +e+ Bv7_173630_utzy.t1 488 AEKLDRIRPDDIKIEDDELVIINCMCRSGTLPDETVEADSQKDAFLKLIKQLNPRLFIHGVVNGTFNAPFFITRFREAIFHYSAIFDIFEE 578 *************************************************************************************** PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 +lpre+++r +E e++g+e+ nv+aceg+er++r et+++W+ r ++aG++++p++ + + ak++++ + + + v+e++++l++gWk+ Bv7_173630_utzy.t1 579 TLPREDHARLLIESEVFGKEALNVIACEGTERIQRPETYKQWQVRTTRAGLRQLPFEREFFDRAKAMVKANYHKDFVVDEDRNWLLQGWKG 669 ********************************************************************888************ PP GRAS 365 rpLvsvSaWr 374 r+ +++S W+ Bv7_173630_utzy.t1 670 RTFYALSIWQ 679 *******6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.797	282	659	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-110	310	679	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MYPVLVDPEL ESLSYELKYN PELLSNFFTH QDFGNGISLG DIFENNTLVD QKPQSVEFNE 60 SCVSSDSLDA PDFSDACLKF LSDILLEENL DEIPASVQDV RALEATEKSL YDALGEEYSP 120 CDDLTSFLDQ SIENPDVSFE RSWDSSYGVE GYSNGDTTIE SNVGMNQTPP EPIISLSDLS 180 HPLVKQNSQS SGSSNSDDCA DGIATSPAST VSSAALKKED KVESRSRRKK NRQRDDGAHG 240 GGRSNKQQAS SNEDYVEMEQ YDDVLLCGEN LNDLSLHDKE SKKLQEKGSK GKITRGKKQN 300 NVVEEVDLGT LLNHCAQAVS SFDLRVANER LKQIRQHSSP YGDSIQRLAH YFANGLEARL 360 ASTGSTISGN IVDARMSSSD LFKAYRTYVS AIPYQRLNFF MANTAILKLA EKATKIHIID 420 FGVYLGLQWP CLIQNLAKRP GGPAILRITG IDYPQQGFRP AERVEATGRR LAGYCERFSV 480 PFQYQAIAEK LDRIRPDDIK IEDDELVIIN CMCRSGTLPD ETVEADSQKD AFLKLIKQLN 540 PRLFIHGVVN GTFNAPFFIT RFREAIFHYS AIFDIFEETL PREDHARLLI ESEVFGKEAL 600 NVIACEGTER IQRPETYKQW QVRTTRAGLR QLPFEREFFD RAKAMVKANY HKDFVVDEDR 660 NWLLQGWKGR TFYALSIWQP C

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MYPVLVDPEL ESLSYELKYN PELLSNFFTH QDFGNGISLG DIFENNTLVD QKPQSVEFNE  60
SCVSSDSLDA PDFSDACLKF LSDILLEENL DEIPASVQDV RALEATEKSL YDALGEEYSP  120
CDDLTSFLDQ SIENPDVSFE RSWDSSYGVE GYSNGDTTIE SNVGMNQTPP EPIISLSDLS  180
HPLVKQNSQS SGSSNSDDCA DGIATSPAST VSSAALKKED KVESRSRRKK NRQRDDGAHG  240
GGRSNKQQAS SNEDYVEMEQ YDDVLLCGEN LNDLSLHDKE SKKLQEKGSK GKITRGKKQN  300
NVVEEVDLGT LLNHCAQAVS SFDLRVANER LKQIRQHSSP YGDSIQRLAH YFANGLEARL  360
ASTGSTISGN IVDARMSSSD LFKAYRTYVS AIPYQRLNFF MANTAILKLA EKATKIHIID  420
FGVYLGLQWP CLIQNLAKRP GGPAILRITG IDYPQQGFRP AERVEATGRR LAGYCERFSV  480
PFQYQAIAEK LDRIRPDDIK IEDDELVIIN CMCRSGTLPD ETVEADSQKD AFLKLIKQLN  540
PRLFIHGVVN GTFNAPFFIT RFREAIFHYS AIFDIFEETL PREDHARLLI ESEVFGKEAL  600
NVIACEGTER IQRPETYKQW QVRTTRAGLR QLPFEREFFD RAKAMVKANY HKDFVVDEDR  660
NWLLQGWKGR TFYALSIWQP C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-47	315	680	25	379	Protein SCARECROW
5b3h_D	4e-47	315	680	25	379	Protein SCARECROW
5hyz_A	2e-47	312	679	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019106558.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A0K9QAZ3	0.0	A0A0K9QAZ3_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010685731.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-163	GRAS family protein