PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_173610_otwr.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

GRAS

Protein Properties

Length: 694aa MW: 78681.8 Da PI: 5.7538

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_173610_otwr.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	369	6.4e-113	321	692	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++cAeav d++ a++lL++++++a+p gd++qR+a++f+++L+ar+++++s lyka ++ s s+ l+ ++l++ + P+ Bv7_173610_otwr.t1 321 LRTLLIQCAEAVGICDFATANELLKQIRQHATPFGDSVQRVAHHFANGLEARMTGTGSDLYKASDWKRFS---PSDILKGYRLYVSAVPFQ 408 6789********************************************************99999999...79999********* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 + ++++aNq+I + +e++ ++Hi+Df+i G+QWp+L+q+LasRp gpp+l+iTg+++p+sg ++++eetg+rLa ++e++gvpfef++ Bv7_173610_otwr.t1 409 RTTYFLANQTIAKLAEKAPKIHIVDFGIFFGFQWPCLIQTLASRPLGPPRLKITGIDNPRSGfrPAQTIEETGRRLAGYCERFGVPFEFQA 499 *********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a++++++++++ +++++E ++V++ +q +rl+de+v+++s+rd++L+lv+sl+P+++++ + n++ F++rf eal++ys+lfd + Bv7_173610_otwr.t1 500 -IAQHWHTVSPKDVNIERDELVVVSCFYQSKRLPDETVDVNSPRDSFLRLVRSLNPDLFIHGVINGTFNASFFVTRFREALYHYSSLFDVF 589 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 ea++ +e++er+ +E+ l g++++n+vaceg+er+er et+++W+ r ++aGF +vpl++ + + a++++r + + +++ee+++++v+gW Bv7_173610_otwr.t1 590 EATMLNEDRERQLIENYLYGKDAMNIVACEGSERIERPETYKQWNVRHQRAGFMQVPLDQGIINRARAMVRANYHKDFMLEEDKHWMVQGW 680 **********************************************************************888********** PP GRAS 363 kdrpLvsvSaWr 374 k+r ++++W+ Bv7_173610_otwr.t1 681 KGRIFSAITCWK 692 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.29	295	672	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-110	321	692	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MYFIPEKGYH PRILGSQDCV NGNGSFQNYG IYEESISLND ISNDFYHQTH EDSPGIPDFP 60 DACLKFMNDI LMEEDLDGRL ANLQDYHALQ ATEKSFYDAL GETYPPSVDQ TPSSFGGTTE 120 ASGDLNNSCY AASVESNRLI HHSQSEGFQQ ADDTYPYVLE STSECSGSSS SFNCLRDGLA 180 DSPVSTLFDN ELSYVVNSGM SRAYKEKNSK DIEGQDEKRE EVDNGNVSKG RKNHQRESSS 240 YLEERSAKQV ASSNEEYAVM EKFDDVLISK TGNDDISPGI SKIAVNEARE DIQKDENPKG 300 SKSKRRSSRG KKKTNREVVD LRTLLIQCAE AVGICDFATA NELLKQIRQH ATPFGDSVQR 360 VAHHFANGLE ARMTGTGSDL YKASDWKRFS PSDILKGYRL YVSAVPFQRT TYFLANQTIA 420 KLAEKAPKIH IVDFGIFFGF QWPCLIQTLA SRPLGPPRLK ITGIDNPRSG FRPAQTIEET 480 GRRLAGYCER FGVPFEFQAI AQHWHTVSPK DVNIERDELV VVSCFYQSKR LPDETVDVNS 540 PRDSFLRLVR SLNPDLFIHG VINGTFNASF FVTRFREALY HYSSLFDVFE ATMLNEDRER 600 QLIENYLYGK DAMNIVACEG SERIERPETY KQWNVRHQRA GFMQVPLDQG IINRARAMVR 660 ANYHKDFMLE EDKHWMVQGW KGRIFSAITC WKPA

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MYFIPEKGYH PRILGSQDCV NGNGSFQNYG IYEESISLND ISNDFYHQTH EDSPGIPDFP  60
DACLKFMNDI LMEEDLDGRL ANLQDYHALQ ATEKSFYDAL GETYPPSVDQ TPSSFGGTTE  120
ASGDLNNSCY AASVESNRLI HHSQSEGFQQ ADDTYPYVLE STSECSGSSS SFNCLRDGLA  180
DSPVSTLFDN ELSYVVNSGM SRAYKEKNSK DIEGQDEKRE EVDNGNVSKG RKNHQRESSS  240
YLEERSAKQV ASSNEEYAVM EKFDDVLISK TGNDDISPGI SKIAVNEARE DIQKDENPKG  300
SKSKRRSSRG KKKTNREVVD LRTLLIQCAE AVGICDFATA NELLKQIRQH ATPFGDSVQR  360
VAHHFANGLE ARMTGTGSDL YKASDWKRFS PSDILKGYRL YVSAVPFQRT TYFLANQTIA  420
KLAEKAPKIH IVDFGIFFGF QWPCLIQTLA SRPLGPPRLK ITGIDNPRSG FRPAQTIEET  480
GRRLAGYCER FGVPFEFQAI AQHWHTVSPK DVNIERDELV VVSCFYQSKR LPDETVDVNS  540
PRDSFLRLVR SLNPDLFIHG VINGTFNASF FVTRFREALY HYSSLFDVFE ATMLNEDRER  600
QLIENYLYGK DAMNIVACEG SERIERPETY KQWNVRHQRA GFMQVPLDQG IINRARAMVR  660
ANYHKDFMLE EDKHWMVQGW KGRIFSAITC WKPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-51	305	693	3	380	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685728.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A0K9RTH3	0.0	A0A0K9RTH3_SPIOL; Uncharacterized protein
STRING	XP_010685728.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-162	GRAS family protein