PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_170470_eztu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 417aa    MW: 46213.8 Da    PI: 6.6863
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_170470_eztu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l+ +++ +G g+W++++r  g+ R++k+c++rw +yl
  Bv7_170470_eztu.t1 14 RGLWSPEEDEKLISYITTYGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61
                        788*******************************************97 PP
2Myb_DNA-binding49.11.3e-1567109145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         rg+++++E  l++d+++ lG++ W+ Ia++++ gRt++++k++w+
  Bv7_170470_eztu.t1  67 RGSFSPQEATLIIDLHRILGNR-WSQIAKYLP-GRTDNEVKNFWN 109
                         899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.062961IPR017930Myb domain
SuperFamilySSF466893.74E-2911108IPR009057Homeodomain-like
SMARTSM007174.7E-131363IPR001005SANT/Myb domain
PfamPF002494.3E-151461IPR001005SANT/Myb domain
CDDcd001671.89E-111761No hitNo description
PROSITE profilePS5129424.32562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2465116IPR009057Homeodomain-like
SMARTSM007176.2E-1566114IPR001005SANT/Myb domain
PfamPF002496.2E-1467110IPR001005SANT/Myb domain
CDDcd001676.84E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGNHTCCNKQ KVKRGLWSPE EDEKLISYIT TYGHGCWSSV PRLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEATLIID LHRILGNRWS QIAKYLPGRT DNEVKNFWNS SIKKKLLSHV  120
AVAVSTTTPN IISNDFHLNY LPNTTSSNNF LSHDHDFGGL TTFSPSLNNS INDMIFTSQQ  180
DYDHQISNVN QFSPRISGIQ TFDHPSEVIL NHYFIPHNDL DNMVPPLTTS YDQLLSSSSS  240
SSSFQHLLNE VGIISDHHVN DHPFSCPQSS SVYNPSSSID DDQAIMMSRM KLKKMMLMMG  300
VPTMPKLETI TSFEEEVCNN IPSSLTSHHD SYNDVSKSSP LVVSSCMSSN QVMEYYDMDD  360
NHVIIPSLPS SSSSSSSPPL PRPSSSSSLG PAAAATTALP CGGSQVLINP SSSCWNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150422e-32AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685367.10.0PREDICTED: transcription factor MYB26
TrEMBLA0A0K9RW331e-89A0A0K9RW33_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010685367.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.29e-76myb domain protein 26