PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_170100_tnms.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 609aa    MW: 66877.8 Da    PI: 6.1878
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_170100_tnms.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-09496544348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +W+  E  +lvd+v+++G g+W+ I r      ++Rt  ++k++w+++l
  Bv7_170100_tnms.t1 496 AWSLTEVMKLVDGVAKFGAGRWSEIKRLSFssyTHRTSVDLKDKWRNLL 544
                         7***************************999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.865489548IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-12491548IPR009057Homeodomain-like
SuperFamilySSF466899.36E-16491551IPR009057Homeodomain-like
SMARTSM007179.7E-9493546IPR001005SANT/Myb domain
CDDcd116601.12E-18495545No hitNo description
PfamPF002493.9E-6496544IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MEMVVGVKGS EKGVIEDVAA DKLSSDLAPL KKGADPVVYK LVRVDFDGRF VPATDDELME  60
VEDMLGMEKS EMLSIPDVME TAGYIPNKDD TCDKSDLENH EGLSQIKFSG VDEENSRAEA  120
EGLMQASLPT SASSSKNRHV ETSGNTGKES SSSLQDELSK SGSPGSTPDF SLIKGEIDLD  180
TLSIRELHET FRATFGRRTS AKDKMWLKRR IVMGLTNSCD VSVTSFQIND GKLLKKEEEL  240
SKKLDCEESV AGEICNAGDD GPVNLVACSN LREDIVDDVE LRNSLTESGC GSDDNHEHRA  300
VKRVRKPTKR YIEESSDKEK DSSGKSLSSC KRFGQDESFP KSAVKRALGF HSGDFVTRPE  360
SIGGSGVQVP YVSRVRRCRP RKSITALTKF HSSDVVLTRK IVESSIAVSK PPSDDHSRVK  420
IEETKSIQSE EPIVSEDERE KQCLTSMSDI SQGREQKSVD SIDSTPLDNA SGNNSDDQLA  480
TVPTAKGGMR RKHHRAWSLT EVMKLVDGVA KFGAGRWSEI KRLSFSSYTH RTSVDLKDKW  540
RNLLKASFAN SQADKGMNPR KNAPLPIPAA ILVKVRELAE LNGQTPQVAK RSSNCDSGSS  600
VNKNRSEYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375381RRCRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685325.10.0PREDICTED: uncharacterized protein LOC104899762 isoform X2
TrEMBLA0A0K9RJ000.0A0A0K9RJ00_SPIOL; Uncharacterized protein
STRINGXP_010685324.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-91TRF-like 6