PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_169560_fstc.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Trihelix

Protein Properties

Length: 517aa MW: 55762 Da PI: 10.0196

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_169560_fstc.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.1	1.3e-14	89	176	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + ++ ++ +qCk++++ ++k+yk +k+ +++ ++ s ++++f++l+ Bv7_169560_fstc.t1 89 CWSEGATSVLIDAWGERYMELSRGNLKQKHWKEVADIVssreDYGKAPKTDIQCKNRIDTVKKKYKIEKAKISSG-CGPS-RWAFFERLD 176 7***********************************86544556678889******************8.6665.8****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.3E-25	87	178	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010431	Biological Process	seed maturation

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MDEDEEIRSP SSPPPESPPP APITVTVAAA PPSSTQSPLT PQTPSSLTLA LPIQQFPRPL 60 AITYGGITGA INGGSSGGSG GGGGGREDCW SEGATSVLID AWGERYMELS RGNLKQKHWK 120 EVADIVSSRE DYGKAPKTDI QCKNRIDTVK KKYKIEKAKI SSGCGPSRWA FFERLDRLIG 180 GCSGSTPSPN PGVIKGSGLS GVTVTPATAT VSTGGPVSKA VPVGIPVVRN WRPPSIDPKK 240 YMEFWQREQQ RVGQRQVYGP GWTARPNHMV SQPMSNQTSN GNGNGNGNSN SNAASTPACN 300 YNSYMSIQEQ ARLMAGGRLR PLSHLPPQPQ PRPQSQPQPP VSVDTDSDQE AWSNDSADSL 360 PPERPGFERR KRPRMDVDNR GGERGNVKGK GKGSENGNGR EKKAAVRVWG NSVRELTRAI 420 LKFGEAYETA ESTKLQHVVE MEMQRMKFAK ELELQRMKFM MKTQLEISQL NGNGSNNSDS 480 RGGGSGGIGG GENNRNNNNR HHLHGNHLNH ANSDSSN

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MDEDEEIRSP SSPPPESPPP APITVTVAAA PPSSTQSPLT PQTPSSLTLA LPIQQFPRPL  60
AITYGGITGA INGGSSGGSG GGGGGREDCW SEGATSVLID AWGERYMELS RGNLKQKHWK  120
EVADIVSSRE DYGKAPKTDI QCKNRIDTVK KKYKIEKAKI SSGCGPSRWA FFERLDRLIG  180
GCSGSTPSPN PGVIKGSGLS GVTVTPATAT VSTGGPVSKA VPVGIPVVRN WRPPSIDPKK  240
YMEFWQREQQ RVGQRQVYGP GWTARPNHMV SQPMSNQTSN GNGNGNGNSN SNAASTPACN  300
YNSYMSIQEQ ARLMAGGRLR PLSHLPPQPQ PRPQSQPQPP VSVDTDSDQE AWSNDSADSL  360
PPERPGFERR KRPRMDVDNR GGERGNVKGK GKGSENGNGR EKKAAVRVWG NSVRELTRAI  420
LKFGEAYETA ESTKLQHVVE MEMQRMKFAK ELELQRMKFM MKTQLEISQL NGNGSNNSDS  480
RGGGSGGIGG GENNRNNNNR HHLHGNHLNH ANSDSSN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00356	DAP	Transfer from AT3G14180	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685259.1	0.0	PREDICTED: trihelix transcription factor ASIL2
Swissprot	Q9LJG8	3e-61	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A0K9Q9Q4	1e-135	A0A0K9Q9Q4_SPIOL; Uncharacterized protein
STRING	XP_010685259.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-45	sequence-specific DNA binding transcription factors