PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_167620_hhcm.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Trihelix

Protein Properties

Length: 339aa MW: 38604.7 Da PI: 6.5265

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_167620_hhcm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.1	1.1e-18	65	155	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 W+++e+l Li+a++e++ +l+rg+lk+ +Weevs + ++ gf ++s +qC++k+e+l+kry+++k +s+ ++ + yf+ ++ Bv7_167620_hhcm.t1 65 WSHEETLNLIKAYQEKWYSLKRGQLKASQWEEVSVTVaARCGFdepSKSGTQCRHKIEKLRKRYRAEKLKLAPCyiSSNFTHPWIYFSLMD 155 ********************************99966667765579****************9987766544566666666776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.2E-17	64	156	No hit	No description
PROSITE profile	PS50090	6.586	64	125	IPR017877	Myb-like domain
SMART	SM00595	2.0E-7	72	162	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MSSPPSTTTP TPTPPLERTL ETPLPPSPPA QAPAPAPPAA PPAAPPPIIQ ALSYSPLKKP 60 QPIPWSHEET LNLIKAYQEK WYSLKRGQLK ASQWEEVSVT VAARCGFDEP SKSGTQCRHK 120 IEKLRKRYRA EKLKLAPCYI SSNFTHPWIY FSLMDHLERG PLPISAVPPN FIDNNNNNNN 180 LVDSDDDDDD GDGGVVKYAS LGKLREFDHK RVDGFSKTDN GYVGLNKRKS YWGGNQEDKL 240 GFQMEDEEER GDDEVEEERE NKGSLMGELG AQMRVFSESF VKMERKKMEL MRETERFRME 300 MENKRIHMIH LFQHKTVELI SKAFSDDSSF KKMKINPDL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685013.1	0.0	PREDICTED: uncharacterized protein LOC104899512
TrEMBL	A0A0K9RCJ7	1e-114	A0A0K9RCJ7_SPIOL; Uncharacterized protein
STRING	XP_010685013.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	8e-28	Trihelix family protein