PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_163790_fzoa.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

HB-other

Protein Properties

Length: 968aa MW: 106931 Da PI: 8.0782

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_163790_fzoa.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.8	2.8e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ l+ ++++F + +s++e +e+ + gLt +qV+ +F +R + ++ Bv7_163790_fzoa.t2 69 KRPRDLLNPKALKYMQAVFSIKDAISKKELREIGALFGLTVTQVREYFAGQRSRVRR 125 799*************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.203	66	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-7	68	128	IPR009057	Homeodomain-like
SMART	SM00389	3.2E-5	68	130	IPR001356	Homeobox domain
CDD	cd00086	2.85E-5	69	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-5	69	133	IPR009057	Homeodomain-like
SuperFamily	SSF47676	3.14E-6	225	314	IPR017923	Transcription factor IIS, N-terminal
Gene3D	G3DSA:1.20.930.10	2.7E-4	226	315	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence Send to blast
MEVLKDYPSE IDIGNSMESF QKGMDLQKHL FHNQIDQLRN IVVTQCKLTG VNPLSQEMAA 60 GALSINIGKR PRDLLNPKAL KYMQAVFSIK DAISKKELRE IGALFGLTVT QVREYFAGQR 120 SRVRRIVRLS REKAIRTSAT KEIQDGVSAD ADLMHPIDPT PLSSIGPSNA EEVPSCSNQD 180 EVLPGLGESE RHFVENIFSS MCKEETFSGQ VKLMDWILQI ENPLILGWFL MKGGVMILAT 240 WLSQAASEEQ TSVVSAVLKV LCHLPLNKAV PAHMSAVLQG VNKLRFYRLP DISNRARVLL 300 SKWSRMFAKS QALKKPNGVR TAGGSQPDID LSGRLGELVG DGSWQSSVDD HDILALSYVG 360 PDDTRKVETL EAVKLLTASS DDTNKKLILG TSTAHNKERR KVQLVEQPGQ KAGSKSQPVK 420 AVLANQRRPI TADEIQKAKM RAQFMQSNKR KTEGPNKPSL LTNDLLSASE AYLRPKLEAQ 480 KKARLLPPKS STKQVECPSD HKPTFDQKET LLEKCRRVQI PWRAPPEIQL IAEVGAGESS 540 KELEGQRNRI HREKETIYRM LHEVPPNPKE PWDIEIDYDD TLTPEIPIDQ LPDSDGADHV 600 PENLNDSSAD HSTSSQAEPD LELLAVLLKN PDLVFALTSG QASGLSSEDT VKLLDLLKSS 660 GGEALLNGQA SGKSEEVKVE VSLPSPTPTR NVEVSLPSPT PPSRFEVSLP SPTPSTNPGP 720 SGWTTTQAAK NPFTRHTMAV QDSAVVTTAV ITSDRPQNGC TLQPQFASTA PAVVPSLPQY 780 RSSQTQILGP VTHSPSLIPE NHLTFYAPNP AQNPPTMNSS IIPSYTRQTR PRIHSHPQPE 840 QYPLHEDSSN TEMVKARHGL SHNLPFNNHV TQNVYNTPIM TGGQPDPTWE NNSYCTGGQK 900 GYELRNPENS PGPMRYPPEH HHGHGWSYPE QRERGYGPPD RLSRHQSWRG SSGGGGVNRR 960 WNGGDRRR

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence Send to blast

MEVLKDYPSE IDIGNSMESF QKGMDLQKHL FHNQIDQLRN IVVTQCKLTG VNPLSQEMAA  60
GALSINIGKR PRDLLNPKAL KYMQAVFSIK DAISKKELRE IGALFGLTVT QVREYFAGQR  120
SRVRRIVRLS REKAIRTSAT KEIQDGVSAD ADLMHPIDPT PLSSIGPSNA EEVPSCSNQD  180
EVLPGLGESE RHFVENIFSS MCKEETFSGQ VKLMDWILQI ENPLILGWFL MKGGVMILAT  240
WLSQAASEEQ TSVVSAVLKV LCHLPLNKAV PAHMSAVLQG VNKLRFYRLP DISNRARVLL  300
SKWSRMFAKS QALKKPNGVR TAGGSQPDID LSGRLGELVG DGSWQSSVDD HDILALSYVG  360
PDDTRKVETL EAVKLLTASS DDTNKKLILG TSTAHNKERR KVQLVEQPGQ KAGSKSQPVK  420
AVLANQRRPI TADEIQKAKM RAQFMQSNKR KTEGPNKPSL LTNDLLSASE AYLRPKLEAQ  480
KKARLLPPKS STKQVECPSD HKPTFDQKET LLEKCRRVQI PWRAPPEIQL IAEVGAGESS  540
KELEGQRNRI HREKETIYRM LHEVPPNPKE PWDIEIDYDD TLTPEIPIDQ LPDSDGADHV  600
PENLNDSSAD HSTSSQAEPD LELLAVLLKN PDLVFALTSG QASGLSSEDT VKLLDLLKSS  660
GGEALLNGQA SGKSEEVKVE VSLPSPTPTR NVEVSLPSPT PPSRFEVSLP SPTPSTNPGP  720
SGWTTTQAAK NPFTRHTMAV QDSAVVTTAV ITSDRPQNGC TLQPQFASTA PAVVPSLPQY  780
RSSQTQILGP VTHSPSLIPE NHLTFYAPNP AQNPPTMNSS IIPSYTRQTR PRIHSHPQPE  840
QYPLHEDSSN TEMVKARHGL SHNLPFNNHV TQNVYNTPIM TGGQPDPTWE NNSYCTGGQK  900
GYELRNPENS PGPMRYPPEH HHGHGWSYPE QRERGYGPPD RLSRHQSWRG SSGGGGVNRR  960
WNGGDRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM566096	0.0	HM566096.1 UNVERIFIED: Beta vulgaris LD-like gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010684373.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS isoform X2
Swissprot	Q38796	1e-160	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0K9RS10	0.0	A0A0K9RS10_SPIOL; Uncharacterized protein
STRING	XP_010684371.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-155	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]