PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_162030_omgs.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

MYB_related

Protein Properties

Length: 483aa MW: 54562.9 Da PI: 5.0328

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_162030_omgs.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.9e-07	372	419	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 ++WT +E lvd+ ++G g+W+++ + + +Rt+ +++++w+++ Bv7_162030_omgs.t1 372 KPWTLDEVVALVDGMSKFGIGQWTAVKKAFFssSRRTATDIRDKWRNL 419 58***************************999************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-11	365	425	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.711	366	424	IPR017930	Myb domain
SuperFamily	SSF46689	4.84E-13	368	422	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-8	370	422	IPR001005	SANT/Myb domain
CDD	cd11660	1.55E-18	372	421	No hit	No description
Pfam	PF13921	1.0E-6	374	428	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MMMNEVKEDN HYIADFGYGG SDFRHLWAEP EKDQASALYL DASFEKAFKI DDVSSVFHYE 60 LIAENGGLDS YMTEGKGELR CSDFDEILHE DIITNLPLAV SISHASEDHY LDVDFAKKVP 120 DLDCQFCDEW NADSLRSEIN SPGTSDEEVG ASESSILPPQ CLNDQIVKIT SDEMPNDSGG 180 DSRYQRPVED KMDLKCSLLC DIQDAQDTND VRNTLEVGSS FAYEGKKAQF CITSVKSPYT 240 SICTHDEVGE LSQGTKEEDF CVDDLSPDSC AETEIVRVRQ RRLCRPPQRY LDGSPLLKSR 300 LHRGKKPPTS MLKDEDLGAE SQNKHCRKGL EIKASKTWAR NLEHETDDEY EPVESSFNIR 360 KSKRNDRRKN CKPWTLDEVV ALVDGMSKFG IGQWTAVKKA FFSSSRRTAT DIRDKWRNLV 420 KTKCRSSNGR KDDQQRNGVQ PLPKPVIERV RELASAPVVK CRSKSGRKLS GSRCSDMTLF 480 LAE

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MMMNEVKEDN HYIADFGYGG SDFRHLWAEP EKDQASALYL DASFEKAFKI DDVSSVFHYE  60
LIAENGGLDS YMTEGKGELR CSDFDEILHE DIITNLPLAV SISHASEDHY LDVDFAKKVP  120
DLDCQFCDEW NADSLRSEIN SPGTSDEEVG ASESSILPPQ CLNDQIVKIT SDEMPNDSGG  180
DSRYQRPVED KMDLKCSLLC DIQDAQDTND VRNTLEVGSS FAYEGKKAQF CITSVKSPYT  240
SICTHDEVGE LSQGTKEEDF CVDDLSPDSC AETEIVRVRQ RRLCRPPQRY LDGSPLLKSR  300
LHRGKKPPTS MLKDEDLGAE SQNKHCRKGL EIKASKTWAR NLEHETDDEY EPVESSFNIR  360
KSKRNDRRKN CKPWTLDEVV ALVDGMSKFG IGQWTAVKKA FFSSSRRTAT DIRDKWRNLV  420
KTKCRSSNGR KDDQQRNGVQ PLPKPVIERV RELASAPVVK CRSKSGRKLS GSRCSDMTLF  480
LAE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010684090.1	0.0	PREDICTED: uncharacterized protein LOC104898683
TrEMBL	A0A0K9QGE2	0.0	A0A0K9QGE2_SPIOL; Uncharacterized protein
STRING	XP_010684090.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	3e-20	TRF-like 6