PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_161460_yejr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 380aa    MW: 43305.8 Da    PI: 7.9643
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_161460_yejr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  Bv7_161460_yejr.t1 14 KGPWSPEEDAKLKQYIEKFGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding38.42.8e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Bv7_161460_yejr.t1  69 GEFSDEEDRIICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.125962IPR017930Myb domain
SuperFamilySSF466891.48E-2711109IPR009057Homeodomain-like
SMARTSM007171.4E-121364IPR001005SANT/Myb domain
PfamPF002492.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-251569IPR009057Homeodomain-like
CDDcd001674.84E-91662No hitNo description
PROSITE profilePS5129422.53963117IPR017930Myb domain
SMARTSM007174.2E-1267115IPR001005SANT/Myb domain
PfamPF002495.3E-1169111IPR001005SANT/Myb domain
CDDcd001674.83E-870113No hitNo description
Gene3DG3DSA:1.10.10.607.1E-2470118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKQYIE KFGTGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLIST  120
MNNNNNNTSK KPHQNHHLYH QYYPMFQNHY PLSLSSPSSL LSHAISPSSS SSYQCTSTYY  180
NDSPSNSMTM SFTQGCYNNI SPTSNNNNNN TLILKQDYPH QMLKDNSTLL VFGGDHHQNH  240
QNQPSSCSSD GSCSITQMIT NQVKQEDHHH DNNIQHQQNN YGGQVSVNYH QGKRLSDVNH  300
DGDHHNNTDQ MLVDQKPSCV TTTTAGLWGQ NSQNTSLLLD YGLEEIKQLI STNINVENNF  360
NYFGENKAEE KDTKVMYYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7499201e-143KP749920.1 Salicornia brachiata R2R3 type MYB15 (MYB15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684035.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A0K9QGU31e-128A0A0K9QGU3_SPIOL; Uncharacterized protein
STRINGXP_010684035.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-77myb domain protein 36