PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv7_160700_mwox.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | Trihelix | ||||||||
Protein Properties | Length: 523aa MW: 59187.5 Da PI: 6.6388 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 74.4 | 1.8e-23 | 150 | 259 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ Bv7_160700_mwox.t1 150 KWTDNMVRLLIMAVYYIGDEGGAEIgsdkkkpgsggggggggggagllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDIL 240 7**************99999997422345778899999999************************************************** PP trihelix 69 kkr.tsessstcpyfdqle 86 +k+ +++++++ ++d+++ Bv7_160700_mwox.t1 241 GKGtACRVVENQTLLDSMD 259 ***559********99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.4E-20 | 148 | 284 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MEGSGFSGRM YSNTGVGMLG LEIPLNQQQQ QSQQQQQQQQ QHSQQQHLQK HPHMVAFTNN 60 HHKQHQQHEQ QTQLSMKQPT NYLSSYNNPN SNPNTNPTQN QNPGLKIKTQ MTHLTNSDED 120 EPGCANDHEN SSVDDKSKGG TNVSPWHRMK WTDNMVRLLI MAVYYIGDEG GAEIGSDKKK 180 PGSGGGGGGG GGGAGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN KRYKRVNDIL 240 GKGTACRVVE NQTLLDSMDV TPKLKEEVRK LLNSKHLFFR EMCAYHNSCG YGAGGHGSDP 300 GAAAAAVTVA EQPQSQPQHI QHNNPLHHHH HQHQQQMPMP KQQQQSCSHS ATMSQSSMDP 360 NSSHKLGLGL EDHDEDDDDD DEDDEDEYYE EDEEQDEGGQ RKKAKTVVGD SSNNNSHALQ 420 KLNGEIMGML QDGSKSSREK KQWMMTQLVQ LEEQGLKFQF QALELEKQRW RWIKFSSKKE 480 REMEKMKIDN ERKRLETERM MLLLRQKEME VLVEPSNPSC VSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010683922.1 | 0.0 | PREDICTED: AF4/FMR2 family member 4 | ||||
TrEMBL | A0A2C9VCP2 | 1e-136 | A0A2C9VCP2_MANES; Uncharacterized protein | ||||
STRING | XP_010683922.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 4e-62 | sequence-specific DNA binding transcription factors |